{ "type": "genome", "identifier": "GCF_006476605.1", "organism": "Brucella gallinifaecis", "title": "Brucella gallinifaecis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006476605.1", "bioproject": "PRJNA224116", "biosample": "SAMN11998090", "wgs_master": "VEWJ00000000.1", "refseq_category": "reference genome", "taxid": "215590", "species_taxid": "215590", "organism_name": "Brucella gallinifaecis", "infraspecific_name": "strain=ISO 196", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/24", "asm_name": "ASM647660v1", "asm_submitter": "Sichuan University", "gbrs_paired_asm": "GCA_006476605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/476/605/GCF_006476605.1_ASM647660v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3742416", "genome_size_ungapped": "3742406", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006476605.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3550", "protein_coding_gene_count": "3403", "non_coding_gene_count": "57", "pubmed_id": "12807218" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-24", "dateModified": "2019-06-24", "datePublished": "2019-06-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Brucella gallinifaecis" ], "sample_taxid": [ "215590" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.063 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3742416", "Number of Sequences": "37", "Longest Sequences (bp)": "495126", "N50 (bp)": "373399", "Gap Ratio (%)": "0.000267", "GCcontent (%)": "51.0", "Number of CDSs": "3489", "Average Protein Length": "309.1", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brucella gallinifaecis", "strain": "strain=ISO 196", "accession": "GCA_006476605.1", "taxid": 215590, "species_taxid": 215590, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1229, "total_fragments": 1230, "ani_threshold": 95, 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"GCA_002278035.1", "taxid": 271865, "species_taxid": 271865, "relation_to_type": "type", "validated": true, "ani": 81.5285, "matched_fragments": 743, "total_fragments": 1230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_907164595.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 78.3491, "matched_fragments": 246, "total_fragments": 1230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudochrobactrum algeriensis", "strain": "", "accession": "GCA_018436245.1", "taxid": 2834768, "species_taxid": 2834768, "relation_to_type": "type", "validated": true, "ani": 78.3331, "matched_fragments": 247, "total_fragments": 1230, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, 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1230, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.78", "min_intra_species_ani": "99.78", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002252475.1", "gtdb_species": "s__Ochrobactrum_A rhizosphaerae", "ani": 81.8708, "matched_fragments": 733, "total_fragments": 1230, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.247, "cell_length": -0.081, "doubling_h": 0.301, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": 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