{ "type": "genome", "identifier": "GCF_006491595.2", "organism": "Flavobacterium jejuense", "title": "Flavobacterium jejuense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Oceanology Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006491595.2", "bioproject": "PRJNA224116", "biosample": "SAMN11998959", "wgs_master": "VEVQ00000000.2", "refseq_category": "reference genome", "taxid": "1544455", "species_taxid": "1544455", "organism_name": "Flavobacterium jejuense", "infraspecific_name": "strain=EC11", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/03/20", "asm_name": "ASM649159v2", "asm_submitter": "Institute of Oceanology Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_006491595.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/491/595/GCF_006491595.2_ASM649159v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4753655", "genome_size_ungapped": "4753555", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006491595.2-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4269", "protein_coding_gene_count": "4170", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-03-20", "dateModified": "2020-03-20", "datePublished": "2020-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium jejuense" ], "sample_taxid": [ "1544455" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.302 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4753655", "Number of Sequences": "74", "Longest Sequences (bp)": "605467", "N50 (bp)": "290195", "Gap Ratio (%)": "0.002104", "GCcontent (%)": "29.9", "Number of CDSs": "4169", "Average Protein Length": "336.8", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium jejuense", "strain": "strain=EC11", "accession": "GCA_006491595.2", "taxid": 1544455, "species_taxid": 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"ani": 80.9194, "matched_fragments": 741, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 80.5381, "matched_fragments": 759, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium haoranii", "strain": "strain=DSM 22807", "accession": "GCA_900142055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 78.7405, "matched_fragments": 408, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium haoranii", "strain": "strain=KCTC 23008", "accession": "GCA_009363055.1", "taxid": 683124, "species_taxid": 683124, "relation_to_type": "type", "validated": true, "ani": 78.6553, "matched_fragments": 415, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tibetense", "strain": "strain=YH5", "accession": "GCA_003293845.1", "taxid": 2233533, "species_taxid": 2233533, "relation_to_type": "type", "validated": true, "ani": 78.5305, "matched_fragments": 348, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 78.4664, "matched_fragments": 386, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 78.2633, "matched_fragments": 386, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bernardetii", "strain": "strain=F-372", "accession": "GCA_011305415.1", "taxid": 2813823, "species_taxid": 2813823, "relation_to_type": "type", "validated": true, "ani": 77.6091, "matched_fragments": 326, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 77.1041, "matched_fragments": 239, "total_fragments": 1556, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006491595.2", "gtdb_species": "s__Flavobacterium jejuense", "ani": 100.0, "matched_fragments": 1554, "total_fragments": 1556, "gtdb_taxonomy": 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