{ "type": "genome", "identifier": "GCF_006494535.1", "organism": "Paucihalobacter ruber", "title": "Paucihalobacter ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "State key laboratory of microbial technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006494535.1", "bioproject": "PRJNA224116", "biosample": "SAMN12098056", "wgs_master": "VHIQ00000000.1", "refseq_category": "reference genome", "taxid": "2567861", "species_taxid": "2567861", "organism_name": "Paucihalobacter ruber", "infraspecific_name": "strain=CWB-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/26", "asm_name": "ASM649453v1", "asm_submitter": "State key laboratory of microbial technology", "gbrs_paired_asm": "GCA_006494535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/494/535/GCF_006494535.1_ASM649453v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3548031", "genome_size_ungapped": "3548011", "gc_percent": "36.500000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006494535.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3145", "protein_coding_gene_count": "3093", "non_coding_gene_count": "46", "pubmed_id": "32886596" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-26", "dateModified": "2019-06-26", "datePublished": "2019-06-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Paucihalobacter ruber" ], "sample_taxid": [ "2567861" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chaiwopu Lake" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3548031", "Number of Sequences": "20", "Longest Sequences (bp)": "803566", "N50 (bp)": "543062", "Gap Ratio (%)": "0.000564", "GCcontent (%)": "36.3", "Number of CDSs": "3087", "Average Protein Length": "341.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "4", "Number of tRNAs": "37", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paucihalobacter ruber", "strain": "strain=CWB-1", "accession": "GCA_006494535.1", "taxid": 2567861, "species_taxid": 2567861, 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76.9328, "matched_fragments": 114, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=CGMCC 1.12213", "accession": "GCA_900141715.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.9155, "matched_fragments": 135, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenitalea lutea", "strain": "strain=P7-3-5", "accession": "GCA_000283015.1", "taxid": 1178825, "species_taxid": 1178825, "relation_to_type": "type", "validated": true, "ani": 76.8877, "matched_fragments": 133, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera ponticola", "strain": "strain=MM-14", "accession": "GCA_012931685.1", "taxid": 2042995, "species_taxid": 2042995, "relation_to_type": "type", "validated": true, "ani": 76.8727, "matched_fragments": 140, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana sedimentorum", "strain": "strain=JCM 19808", "accession": "GCA_000943565.1", "taxid": 1435349, "species_taxid": 1435349, "relation_to_type": "type", "validated": true, "ani": 76.8654, "matched_fragments": 139, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella ouciana", "strain": "strain=ZXX205", "accession": "GCA_009709615.1", "taxid": 2608631, "species_taxid": 2608631, "relation_to_type": "type", "validated": true, "ani": 76.7824, "matched_fragments": 127, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.7501, "matched_fragments": 102, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter flavum", "strain": "strain=3B", "accession": "GCA_002843175.1", "taxid": 1909700, "species_taxid": 1909700, "relation_to_type": "type", "validated": true, "ani": 76.6634, "matched_fragments": 149, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 76.6044, "matched_fragments": 108, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter citreus", "strain": "strain=XJNY", "accession": "GCA_002807055.1", "taxid": 2007307, "species_taxid": 2007307, "relation_to_type": "type", "validated": true, "ani": 76.5887, "matched_fragments": 136, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella algicola", "strain": "strain=IMCC33238", "accession": "GCA_005869935.1", "taxid": 2575815, "species_taxid": 2575815, "relation_to_type": "type", "validated": true, "ani": 76.5856, "matched_fragments": 148, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=CGMCC 1.11009", "accession": "GCA_014636335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.553, "matched_fragments": 112, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.5345, "matched_fragments": 113, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 76.5234, "matched_fragments": 126, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 76.455, "matched_fragments": 145, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter marinivivus", "strain": "strain=ZY111", "accession": "GCA_003143755.1", "taxid": 2100723, "species_taxid": 2100723, "relation_to_type": "type", "validated": true, "ani": 76.3959, "matched_fragments": 115, "total_fragments": 1173, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola marinus", "strain": "strain=B011", "accession": "GCA_008085455.1", "taxid": 1912246, "species_taxid": 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