{ "type": "genome", "identifier": "GCF_006494655.1", "organism": "Arthrobacter agilis", "title": "Arthrobacter agilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Bonn", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006494655.1", "bioproject": "PRJNA224116", "biosample": "SAMN12095506", "wgs_master": "VHIM00000000.1", "refseq_category": "na", "taxid": "37921", "species_taxid": "37921", "organism_name": "Arthrobacter agilis", "infraspecific_name": "strain=DSM 20550", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/26", "asm_name": "ASM649465v1", "asm_submitter": "University of Bonn", "gbrs_paired_asm": "GCA_006494655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/494/655/GCF_006494655.1_ASM649465v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3240743", "genome_size_ungapped": "3240743", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006494655.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "3046", "protein_coding_gene_count": "2951", "non_coding_gene_count": "55", "pubmed_id": "7547308" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-26", "dateModified": "2019-06-26", "datePublished": "2019-06-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Arthrobacter agilis" ], "sample_taxid": [ "37921" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3240743", "Number of Sequences": "48", "Longest Sequences (bp)": "617265", "N50 (bp)": "391922", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "3010", "Average Protein Length": "322.4", "Coding Ratio (%)": "89.8", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arthrobacter agilis", "strain": "strain=DSM 20550", "accession": "GCA_006494655.1", "taxid": 37921, "species_taxid": 37921, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1061, "total_fragments": 1065, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arthrobacter bussei", "strain": "strain=KR32", "accession": "GCA_009377195.2", "taxid": 2594179, "species_taxid": 2594179, "relation_to_type": "type", "validated": true, "ani": 84.6722, "matched_fragments": 830, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter ruber", "strain": "strain=MDB1-42", "accession": "GCA_002954225.1", "taxid": 1258893, "species_taxid": 1258893, "relation_to_type": "type", "validated": true, "ani": 83.1618, "matched_fragments": 761, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter pityocampae", "strain": "strain=Tp2", "accession": "GCA_002927275.1", "taxid": 547334, "species_taxid": 547334, "relation_to_type": "type", "validated": true, "ani": 83.1503, "matched_fragments": 781, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter cheniae", "strain": "strain=Hz2", 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"matched_fragments": 782, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002929375.1", "gtdb_species": "s__Arthrobacter_D sp002929375", "ani": 83.2868, "matched_fragments": 785, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Arthrobacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002929295.1", "gtdb_species": "s__Arthrobacter_D sp002929295", "ani": 83.2234, "matched_fragments": 773, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Arthrobacter", "agilis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }