{
    "type": "genome",
    "identifier": "GCF_006503695.1",
    "organism": "Tepidiphilus succinatimandens",
    "title": "Tepidiphilus succinatimandens",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006503695.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10716071",
        "wgs_master": "SBIK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "224436",
        "species_taxid": "224436",
        "organism_name": "Tepidiphilus succinatimandens",
        "infraspecific_name": "strain=DSM 15512",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/28",
        "asm_name": "ASM650369v1",
        "asm_submitter": "China Agricultural University",
        "gbrs_paired_asm": "GCA_006503695.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/503/695/GCF_006503695.1_ASM650369v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2369572",
        "genome_size_ungapped": "2369542",
        "gc_percent": "66.000000",
        "replicon_count": "0",
        "scaffold_count": "41",
        "contig_count": "41",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006503695.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "2369",
        "protein_coding_gene_count": "2275",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-28",
    "dateModified": "2019-06-28",
    "datePublished": "2019-06-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tepidiphilus succinatimandens"
        ],
        "sample_taxid": [
            "224436"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.653 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2369572",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "397282",
        "N50 (bp)": "114827",
        "Gap Ratio (%)": "0.001266",
        "GCcontent (%)": "65.9",
        "Number of CDSs": "2287",
        "Average Protein Length": "320.2",
        "Coding Ratio (%)": "92.7",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Tepidiphilus thermophilus",
                "strain": "strain=JCM 19170",
                "accession": "GCA_001418245.1",
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                "species_taxid": 876478,
                "relation_to_type": "suspected-type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_001517365.1",
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                "matched_fragments": 705,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Tepidiphilus margaritifer",
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                "taxid": 203471,
                "species_taxid": 203471,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidiphilus baoligensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidiphilus olei",
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                "accession": "GCA_006980705.1",
                "taxid": 2502184,
                "species_taxid": 2502184,
                "relation_to_type": "type",
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                "ani": 89.2918,
                "matched_fragments": 598,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thauera phenylacetica",
                "strain": "strain=B4P",
                "accession": "GCA_000310225.1",
                "taxid": 164400,
                "species_taxid": 164400,
                "relation_to_type": "type",
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                "ani": 78.1144,
                "matched_fragments": 302,
                "total_fragments": 771,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_006503695.1",
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                "total_fragments": 771,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
                "min_intra_species_ani": "98.78",
                "mean_intra_species_af": "0.95",
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                "num_clustered_genomes": 4,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000425565.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
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                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Thauera",
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                "mean_intra_species_ani": "N/A",
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            {
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            },
            {
                "accession": "GCA_001724315.1",
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            {
                "accession": "GCA_018240295.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.456,
        "cell_length": 0.301,
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        "growth_tmp": 55.0,
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        "gc_content": null,
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        "gram_stain": 0.0,
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        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "succinatimandens"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}