{ "type": "genome", "identifier": "GCF_006516965.1", "organism": "Pararhizobium mangrovi", "title": "Pararhizobium mangrovi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University of Chinese Medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006516965.1", "bioproject": "PRJNA224116", "biosample": "SAMN12092215", "wgs_master": "VHLH00000000.1", "refseq_category": "reference genome", "taxid": "2590452", "species_taxid": "2590452", "organism_name": "Pararhizobium mangrovi", "infraspecific_name": "strain=BGMRC 6574", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/29", "asm_name": "ASM651696v1", "asm_submitter": "Guangxi University of Chinese Medicine", "gbrs_paired_asm": "GCA_006516965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/516/965/GCF_006516965.1_ASM651696v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3926315", "genome_size_ungapped": "3926315", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "70", "contig_count": "70", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006516965.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3672", "protein_coding_gene_count": "3572", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-29", "dateModified": "2019-06-29", "datePublished": "2019-06-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Pararhizobium mangrovi" ], "sample_taxid": [ "2590452" ], "sample_host_organism": [ "Aegiceras corniculatum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Guangxi" ], "sample_host_location_id": [], "data_size": "1.082 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3926315", "Number of Sequences": "70", "Longest Sequences (bp)": "366854", "N50 (bp)": "103709", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "3638", "Average Protein Length": "319.1", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pararhizobium mangrovi", "strain": "strain=BGMRC 6574", "accession": "GCA_006516965.1", "taxid": 2590452, "species_taxid": 2590452, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1272, "total_fragments": 1274, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 78.9803, "matched_fragments": 477, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella fusca", "strain": "strain=DSM 21319", "accession": "GCA_014203155.1", "taxid": 544480, "species_taxid": 544480, "relation_to_type": "type", "validated": true, "ani": 78.8062, "matched_fragments": 465, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella sumterensis", "strain": "strain=MEC087", "accession": "GCA_004514425.2", "taxid": 1967501, "species_taxid": 1967501, "relation_to_type": "type", "validated": true, "ani": 78.4547, "matched_fragments": 363, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 78.3272, "matched_fragments": 494, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium azooxidifex", "strain": "strain=DSM 100211", "accession": "GCA_014196765.1", "taxid": 1636188, "species_taxid": 1636188, "relation_to_type": "type", "validated": true, "ani": 78.2839, "matched_fragments": 423, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=ATCC 19623", "accession": "GCA_020883495.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 78.2751, "matched_fragments": 415, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella zoogloeoides", "strain": "strain=DSM 287", "accession": "GCA_009826855.1", "taxid": 352475, "species_taxid": 352475, "relation_to_type": "type", "validated": true, "ani": 78.1706, "matched_fragments": 428, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hoeflea olei", "strain": "strain=JC234", "accession": "GCA_001703635.1", "taxid": 1480615, "species_taxid": 1480615, "relation_to_type": "type", "validated": true, "ani": 78.0988, "matched_fragments": 365, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sesbaniae", "strain": "strain=CCBAU 65729", "accession": "GCA_013283665.1", "taxid": 1214071, "species_taxid": 1214071, "relation_to_type": "type", "validated": true, "ani": 77.9374, "matched_fragments": 400, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer sojae", "strain": "strain=CCBAU 05684", "accession": "GCA_000261485.1", "taxid": 716925, "species_taxid": 716925, "relation_to_type": "type", "validated": true, "ani": 77.8869, "matched_fragments": 336, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter lividus", "strain": "strain=DSM 25528", "accession": "GCA_003337715.1", "taxid": 1197950, "species_taxid": 1197950, "relation_to_type": "type", "validated": true, "ani": 77.8208, "matched_fragments": 308, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ensifer alkalisoli", "strain": "strain=YIC4027", "accession": "GCA_008932245.1", "taxid": 1752398, "species_taxid": 1752398, "relation_to_type": "type", "validated": true, "ani": 77.7975, "matched_fragments": 340, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sinorhizobium meliloti", "strain": "strain=NBRC 14782", "accession": "GCA_006539625.1", "taxid": 382, "species_taxid": 382, 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"matched_fragments": 359, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 77.6347, "matched_fragments": 355, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhizobium antarcticum", "strain": "strain=NAQVI 59", "accession": "GCA_001885585.1", "taxid": 1798805, "species_taxid": 1798805, "relation_to_type": "type", "validated": true, "ani": 77.3841, "matched_fragments": 318, "total_fragments": 1274, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phyllobacterium myrsinacearum", "strain": "strain=DSM 5892", "accession": "GCA_002980555.1", "taxid": 28101, "species_taxid": 28101, "relation_to_type": "type", "validated": true, "ani": 76.8761, "matched_fragments": 201, "total_fragments": 1274, 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