{
    "type": "genome",
    "identifier": "GCF_006538545.1",
    "organism": "Burkholderia pseudomallei",
    "title": "Burkholderia pseudomallei",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006538545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00018761",
        "wgs_master": "BJLG00000000.1",
        "refseq_category": "na",
        "taxid": "28450",
        "species_taxid": "28450",
        "organism_name": "Burkholderia pseudomallei",
        "infraspecific_name": "strain=WRAIR 286",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/12",
        "asm_name": "ASM653854v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_006538545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/538/545/GCF_006538545.1_ASM653854v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7006155",
        "genome_size_ungapped": "7006155",
        "gc_percent": "68.500000",
        "replicon_count": "0",
        "scaffold_count": "143",
        "contig_count": "143",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006538545.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "6318",
        "protein_coding_gene_count": "6091",
        "non_coding_gene_count": "61",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-12",
    "dateModified": "2019-06-12",
    "datePublished": "2019-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Burkholderia pseudomallei"
        ],
        "sample_taxid": [
            "28450"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "NA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.875 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7006155",
        "Number of Sequences": "143",
        "Longest Sequences (bp)": "255523",
        "N50 (bp)": "112704",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.3",
        "Number of CDSs": "5784",
        "Average Protein Length": "329.3",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "78",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Burkholderia pseudomallei",
                "strain": "strain=WRAIR 286",
                "accession": "GCA_006538545.1",
                "taxid": 28450,
                "species_taxid": 28450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2263,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Burkholderia pseudomallei",
                "strain": "strain=ATCC 23343",
                "accession": "GCA_001182285.1",
                "taxid": 28450,
                "species_taxid": 28450,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9914,
                "matched_fragments": 2264,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Burkholderia mallei",
                "strain": "strain=ATCC 23344",
                "accession": "GCA_000011705.1",
                "taxid": 13373,
                "species_taxid": 13373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1281,
                "matched_fragments": 1839,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Burkholderia mallei",
                "strain": "strain=NCTC12938",
                "accession": "GCA_900446245.1",
                "taxid": 13373,
                "species_taxid": 13373,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.1258,
                "matched_fragments": 1833,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Burkholderia thailandensis",
                "strain": "strain=E264; ATCC 700388",
                "accession": "GCA_000012365.1",
                "taxid": 57975,
                "species_taxid": 57975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8686,
                "matched_fragments": 1860,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "",
                "accession": "GCA_902499185.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5936,
                "matched_fragments": 1391,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "strain=LMG 20358",
                "accession": "GCA_902833085.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5774,
                "matched_fragments": 1462,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia anthina",
                "strain": "strain=DSM 16086",
                "accession": "GCA_016836725.1",
                "taxid": 179879,
                "species_taxid": 179879,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 84.6368,
                "matched_fragments": 1361,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia perseverans",
                "strain": "strain=INN12",
                "accession": "GCA_022870505.1",
                "taxid": 2615214,
                "species_taxid": 2615214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.2283,
                "matched_fragments": 1310,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia flava",
                "strain": "strain=LD6",
                "accession": "GCA_004359985.1",
                "taxid": 2547393,
                "species_taxid": 2547393,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6719,
                "matched_fragments": 1084,
                "total_fragments": 2268,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000011705.1",
                "gtdb_species": "s__Burkholderia mallei",
                "ani": 99.1455,
                "matched_fragments": 1837,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.71",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 1780,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001462435.1",
                "gtdb_species": "s__Burkholderia humptydooensis",
                "ani": 93.1159,
                "matched_fragments": 1754,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.52",
                "min_intra_species_ani": "99.18",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000012365.1",
                "gtdb_species": "s__Burkholderia thailandensis",
                "ani": 92.8785,
                "matched_fragments": 1859,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.58",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 53,
                "status": "-"
            },
            {
                "accession": "GCF_001524625.2",
                "gtdb_species": "s__Burkholderia sp001524625",
                "ani": 91.2121,
                "matched_fragments": 1814,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.38",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000959365.1",
                "gtdb_species": "s__Burkholderia oklahomensis",
                "ani": 90.9163,
                "matched_fragments": 1855,
                "total_fragments": 2268,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.42",
                "min_intra_species_ani": "95.09",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 15,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.301,
        "doubling_h": -0.188,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.5,
        "optimum_ph": 6.64,
        "genome_size": 7199658.923,
        "gc_content": 67.966,
        "coding_genes": 6700.806,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 60.37,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Burkholderia",
        "pseudomallei"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}