{
    "type": "genome",
    "identifier": "GCF_006539205.1",
    "organism": "Sinomonas atrocyanea",
    "title": "Sinomonas atrocyanea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006539205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00097228",
        "wgs_master": "BJMO00000000.1",
        "refseq_category": "na",
        "taxid": "37927",
        "species_taxid": "37927",
        "organism_name": "Sinomonas atrocyanea",
        "infraspecific_name": "strain=NBRC 12956",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/12",
        "asm_name": "ASM653920v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_006539205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/205/GCF_006539205.1_ASM653920v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4432914",
        "genome_size_ungapped": "4432914",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "144",
        "contig_count": "144",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006539205.1-RS_2024_08_25",
        "annotation_date": "2024-08-25",
        "total_gene_count": "4182",
        "protein_coding_gene_count": "4075",
        "non_coding_gene_count": "56",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-12",
    "dateModified": "2019-06-12",
    "datePublished": "2019-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Sinomonas atrocyanea"
        ],
        "sample_taxid": [
            "37927"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.198 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4432914",
        "Number of Sequences": "144",
        "Longest Sequences (bp)": "184860",
        "N50 (bp)": "59183",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.4",
        "Number of CDSs": "4104",
        "Average Protein Length": "321.0",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Sinomonas atrocyanea",
                "strain": "strain=NBRC 12956",
                "accession": "GCA_006539205.1",
                "taxid": 37927,
                "species_taxid": 37927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1398,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sinomonas atrocyanea",
                "strain": "strain=KCTC 3377",
                "accession": "GCA_001577305.1",
                "taxid": 37927,
                "species_taxid": 37927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9938,
                "matched_fragments": 1407,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sinomonas atrocyanea",
                "strain": "strain=CGMCC 1.1891",
                "accession": "GCA_014644475.1",
                "taxid": 37927,
                "species_taxid": 37927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9101,
                "matched_fragments": 1329,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Sinomonas notoginsengisoli",
                "strain": "strain=KCTC 29237",
                "accession": "GCA_021554725.1",
                "taxid": 1457311,
                "species_taxid": 1457311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.234,
                "matched_fragments": 824,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomonas mesophila",
                "strain": "strain=MPKL 26",
                "accession": "GCA_001999765.1",
                "taxid": 1531955,
                "species_taxid": 1531955,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8386,
                "matched_fragments": 777,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomonas albida",
                "strain": "strain=LC13",
                "accession": "GCA_004919045.1",
                "taxid": 369942,
                "species_taxid": 369942,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.53,
                "matched_fragments": 733,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter sedimenti",
                "strain": "strain=MIC A30",
                "accession": "GCA_011750795.2",
                "taxid": 2694931,
                "species_taxid": 2694931,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8439,
                "matched_fragments": 370,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter wenxiniae",
                "strain": "strain=AETb3-4",
                "accession": "GCA_013376105.1",
                "taxid": 2713570,
                "species_taxid": 2713570,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1775,
                "matched_fragments": 422,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_018622995.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.875,
                "matched_fragments": 302,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter jiangjiafuii",
                "strain": "strain=zg-ZUI227",
                "accession": "GCA_017898065.1",
                "taxid": 2817475,
                "species_taxid": 2817475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8729,
                "matched_fragments": 303,
                "total_fragments": 1408,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001577305.1",
                "gtdb_species": "s__Sinomonas atrocyanea",
                "ani": 99.9938,
                "matched_fragments": 1407,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_014656475.1",
                "gtdb_species": "s__Sinomonas sp014656475",
                "ani": 83.6495,
                "matched_fragments": 896,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002224485.1",
                "gtdb_species": "s__Sinomonas sp002224485",
                "ani": 83.4997,
                "matched_fragments": 903,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001999765.1",
                "gtdb_species": "s__Sinomonas mesophila",
                "ani": 82.7958,
                "matched_fragments": 781,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004919045.1",
                "gtdb_species": "s__Sinomonas albida",
                "ani": 81.5204,
                "matched_fragments": 734,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005877005.1",
                "gtdb_species": "s__Sinomonas susongensis",
                "ani": 80.903,
                "matched_fragments": 695,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005876955.1",
                "gtdb_species": "s__Sinomonas sp005876955",
                "ani": 80.7447,
                "matched_fragments": 708,
                "total_fragments": 1408,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Sinomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
        "cell_length": 0.491,
        "doubling_h": null,
        "growth_tmp": 28.5,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.0,
        "genome_size": 4477380.5,
        "gc_content": 70.24,
        "coding_genes": 4025.5,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 56.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Sinomonas",
        "atrocyanea"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}