{ "type": "genome", "identifier": "GCF_006539345.1", "organism": "Acetobacter peroxydans", "title": "Acetobacter peroxydans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation Biological Resource Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006539345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00097238", "wgs_master": "BJMV00000000.1", "refseq_category": "reference genome", "taxid": "104098", "species_taxid": "104098", "organism_name": "Acetobacter peroxydans", "infraspecific_name": "strain=NBRC 13755", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ASM653934v1", "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center", "gbrs_paired_asm": "GCA_006539345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/345/GCF_006539345.1_ASM653934v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2703456", "genome_size_ungapped": "2703456", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006539345.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "2489", "protein_coding_gene_count": "2425", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Acetobacter peroxydans" ], "sample_taxid": [ "104098" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Netherlands:Delft" ], "sample_host_location_id": [], "data_size": "0.762 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2703456", "Number of Sequences": "29", "Longest Sequences (bp)": "512400", "N50 (bp)": "193251", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.5", "Number of CDSs": "2457", "Average Protein Length": "325.9", "Coding Ratio (%)": "88.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acetobacter peroxydans", "strain": "strain=LMG 1635", "accession": "GCA_011516745.1", "taxid": 104098, "species_taxid": 104098, 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"matched_fragments": 434, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter fabarum", "strain": "strain=LMG 24244", "accession": "GCA_011516925.1", "taxid": 483199, "species_taxid": 483199, "relation_to_type": "type", "validated": true, "ani": 79.5706, "matched_fragments": 368, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=LMG 1617", "accession": "GCA_011516875.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.487, "matched_fragments": 374, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter lovaniensis", "strain": "strain=DSM 4491", "accession": "GCA_014207635.1", "taxid": 104100, "species_taxid": 104100, "relation_to_type": "type", "validated": true, "ani": 79.4783, "matched_fragments": 377, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter ghanensis", "strain": "strain=LMG 23848", "accession": "GCA_011516865.1", "taxid": 431306, "species_taxid": 431306, "relation_to_type": "type", "validated": true, "ani": 79.2224, "matched_fragments": 326, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter okinawensis", "strain": "strain=JCM 25146", "accession": "GCA_000613865.1", "taxid": 1076594, "species_taxid": 1076594, "relation_to_type": "type", "validated": true, "ani": 79.134, "matched_fragments": 344, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acetobacter senegalensis", "strain": "strain=LMG 23690", "accession": "GCA_001580995.1", "taxid": 446692, "species_taxid": 446692, "relation_to_type": "type", "validated": true, "ani": 78.6452, "matched_fragments": 237, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Komagataeibacter sucrofermentans", "strain": "strain=LMG 18788", "accession": "GCA_003207865.1", "taxid": 1053551, "species_taxid": 1053551, "relation_to_type": "type", "validated": true, "ani": 78.0594, "matched_fragments": 215, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 77.3533, "matched_fragments": 106, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asaia lannensis", "strain": "strain=NBRC 102526", "accession": "GCA_024054035.1", "taxid": 415421, "species_taxid": 415421, "relation_to_type": "type", "validated": true, "ani": 77.1602, "matched_fragments": 98, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovastum atsumiense", "strain": "strain=G2-11", "accession": "GCA_937425535.1", "taxid": 504468, "species_taxid": 504468, "relation_to_type": "type", "validated": true, "ani": 76.249, "matched_fragments": 90, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=NCTC13291", "accession": "GCA_900455935.1", "taxid": 207340, "species_taxid": 207340, "relation_to_type": "type", "validated": true, "ani": 76.1957, "matched_fragments": 65, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidiphilium iwatense", "strain": "strain=KCTC 23505", "accession": "GCA_021556475.1", "taxid": 768198, "species_taxid": 768198, "relation_to_type": "type", "validated": true, "ani": 76.0323, "matched_fragments": 61, "total_fragments": 885, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas mucosa", "strain": "strain=ATCC BAA-692", "accession": "GCA_000622225.1", "taxid": 207340, 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