{
    "type": "genome",
    "identifier": "GCF_006539525.1",
    "organism": "Glutamicibacter nicotianae",
    "title": "Glutamicibacter nicotianae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006539525.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00097540",
        "wgs_master": "BJNE00000000.1",
        "refseq_category": "na",
        "taxid": "37929",
        "species_taxid": "37929",
        "organism_name": "Glutamicibacter nicotianae",
        "infraspecific_name": "strain=NBRC 14234",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/12",
        "asm_name": "ASM653952v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_006539525.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/525/GCF_006539525.1_ASM653952v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3554887",
        "genome_size_ungapped": "3554887",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "43",
        "contig_count": "43",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006539525.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "3368",
        "protein_coding_gene_count": "3272",
        "non_coding_gene_count": "60",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-12",
    "dateModified": "2019-06-12",
    "datePublished": "2019-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Glutamicibacter nicotianae"
        ],
        "sample_taxid": [
            "37929"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.998 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3554887",
        "Number of Sequences": "43",
        "Longest Sequences (bp)": "616655",
        "N50 (bp)": "220855",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "61.9",
        "Number of CDSs": "3311",
        "Average Protein Length": "313.6",
        "Coding Ratio (%)": "87.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Glutamicibacter nicotianae",
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                "accession": "GCA_006539525.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1163,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Glutamicibacter mysorens",
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                "accession": "GCA_002797775.1",
                "taxid": 257984,
                "species_taxid": 257984,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 994,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Glutamicibacter mysorens",
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                "status": "inconclusive"
            },
            {
                "organism_name": "Glutamicibacter arilaitensis",
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                "species_taxid": 256701,
                "relation_to_type": "type",
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                "total_fragments": 1163,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter mishrai",
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                "accession": "GCA_012221945.1",
                "taxid": 1775880,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 763,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter protophormiae",
                "strain": "strain=DSM 20168",
                "accession": "GCA_017876615.1",
                "taxid": 37930,
                "species_taxid": 37930,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 727,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Glutamicibacter protophormiae",
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                "accession": "GCA_014647495.1",
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                "species_taxid": 37930,
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                "matched_fragments": 700,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Glutamicibacter halophytocola",
                "strain": "strain=KLBMP 5180",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter pullicola",
                "strain": "strain=Sa2BUA2",
                "accession": "GCA_014836875.1",
                "taxid": 2762224,
                "species_taxid": 2762224,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9996,
                "matched_fragments": 213,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Arthrobacter gallicola",
                "strain": "strain=Sa2CUA1",
                "accession": "GCA_014836775.1",
                "taxid": 2762225,
                "species_taxid": 2762225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9868,
                "matched_fragments": 212,
                "total_fragments": 1163,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sinomonas notoginsengisoli",
                "strain": "strain=KCTC 29237",
                "accession": "GCA_021554725.1",
                "taxid": 1457311,
                "species_taxid": 1457311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3626,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6563,
                "matched_fragments": 126,
                "total_fragments": 1163,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agromyces humatus",
                "strain": "strain=JCM 14319",
                "accession": "GCA_021228295.1",
                "taxid": 279573,
                "species_taxid": 279573,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 91,
                "total_fragments": 1163,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_006539525.1",
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                "matched_fragments": 1160,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter",
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                "accession": "GCF_002979865.1",
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                "num_clustered_genomes": 3,
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            },
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Glutamicibacter",
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                "num_clustered_genomes": 6,
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        ]
    },
    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}