{ "type": "genome", "identifier": "GCF_006539645.1", "organism": "Bradyrhizobium japonicum", "title": "Bradyrhizobium japonicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006539645.1", "bioproject": "PRJNA224116", "biosample": "SAMD00097546", "wgs_master": "BJNK00000000.1", "refseq_category": "na", "taxid": "375", "species_taxid": "375", "organism_name": "Bradyrhizobium japonicum", "infraspecific_name": "strain=NBRC 14783", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ASM653964v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_006539645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/645/GCF_006539645.1_ASM653964v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9096562", "genome_size_ungapped": "9096562", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "177", "contig_count": "177", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006539645.1-RS_2024_09_09", "annotation_date": "2024-09-09", "total_gene_count": "8667", "protein_coding_gene_count": "8391", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium japonicum" ], "sample_taxid": [ "375" ], "sample_host_organism": [ "Glycine hispida" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.530 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9096562", "Number of Sequences": "177", "Longest Sequences (bp)": "690241", "N50 (bp)": "168333", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.7", "Number of CDSs": "8599", "Average Protein Length": "295.4", "Coding Ratio (%)": "83.8", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=NBRC 14783", "accession": "GCA_006539645.1", "taxid": 375, "species_taxid": 375, 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"status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 88.9433, "matched_fragments": 2073, "total_fragments": 2944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 88.8434, "matched_fragments": 2082, "total_fragments": 2944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 88.5635, "matched_fragments": 1965, "total_fragments": 2944, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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