{ "type": "genome", "identifier": "GCF_006539765.1", "organism": "Microbacterium maritypicum", "title": "Microbacterium maritypicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006539765.1", "bioproject": "PRJNA224116", "biosample": "SAMD00097552", "wgs_master": "BJNQ00000000.1", "refseq_category": "na", "taxid": "33918", "species_taxid": "33918", "organism_name": "Microbacterium maritypicum", "infraspecific_name": "strain=NBRC 15037", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ASM653976v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_006539765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/765/GCF_006539765.1_ASM653976v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3331758", "genome_size_ungapped": "3331758", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006539765.1-RS_2024_09_08", "annotation_date": "2024-09-08", "total_gene_count": "3359", "protein_coding_gene_count": "3227", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Microbacterium maritypicum" ], "sample_taxid": [ "33918" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.907 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3331758", "Number of Sequences": "76", "Longest Sequences (bp)": "356772", "N50 (bp)": "185988", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "3275", "Average Protein Length": "310.3", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Microbacterium liquefaciens", "strain": "strain=NBRC 15037", "accession": "GCA_006539765.1", "taxid": 33918, "species_taxid": 33918, 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"status": "below_threshold" }, { "organism_name": "Microbacterium oryzae", "strain": "strain=MB-10", "accession": "GCA_009735645.1", "taxid": 743009, "species_taxid": 743009, "relation_to_type": "type", "validated": true, "ani": 79.5835, "matched_fragments": 408, "total_fragments": 1075, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_008868125.1", "gtdb_species": "s__Microbacterium maritypicum", "ani": 97.8737, "matched_fragments": 929, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Microbacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_000455825.1", 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