{
    "type": "genome",
    "identifier": "GCF_006539805.1",
    "organism": "Lysinibacillus sphaericus",
    "title": "Lysinibacillus sphaericus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006539805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00097554",
        "wgs_master": "BJNS00000000.1",
        "refseq_category": "na",
        "taxid": "1421",
        "species_taxid": "1421",
        "organism_name": "Lysinibacillus sphaericus",
        "infraspecific_name": "strain=NBRC 15095",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/12",
        "asm_name": "ASM653980v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_006539805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/805/GCF_006539805.1_ASM653980v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4523323",
        "genome_size_ungapped": "4523323",
        "gc_percent": "37.000000",
        "replicon_count": "0",
        "scaffold_count": "136",
        "contig_count": "136",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006539805.1-RS_2024_09_09",
        "annotation_date": "2024-09-09",
        "total_gene_count": "4473",
        "protein_coding_gene_count": "4363",
        "non_coding_gene_count": "48",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-12",
    "dateModified": "2019-06-12",
    "datePublished": "2019-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lysinibacillus sphaericus"
        ],
        "sample_taxid": [
            "1421"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.285 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4523323",
        "Number of Sequences": "136",
        "Longest Sequences (bp)": "218350",
        "N50 (bp)": "80765",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.1",
        "Number of CDSs": "4429",
        "Average Protein Length": "283.9",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "2",
        "Number of tRNAs": "42",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lysinibacillus sphaericus",
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                "accession": "GCA_006539805.1",
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                "species_taxid": 1421,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
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                "matched_fragments": 1442,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Lysinibacillus sphaericus",
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            {
                "organism_name": "Lysinibacillus sphaericus",
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                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus sphaericus",
                "strain": "strain=NRRL B-23268",
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                "relation_to_type": "suspected-type",
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                "ani": 99.9915,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus cavernae",
                "strain": "strain=SYSU K30005",
                "accession": "GCA_009724685.1",
                "taxid": 2666135,
                "species_taxid": 2666135,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 722,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus contaminans",
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                "accession": "GCA_001278945.1",
                "taxid": 1293441,
                "species_taxid": 1293441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3758,
                "matched_fragments": 578,
                "total_fragments": 1443,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenisporosarcina cavernae",
                "strain": "strain=K2R23-3",
                "accession": "GCA_003595195.1",
                "taxid": 2320858,
                "species_taxid": 2320858,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cytobacillus solani",
                "strain": "strain=FJAT-18043",
                "accession": "GCA_001420595.1",
                "taxid": 1637975,
                "species_taxid": 1637975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4987,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
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        "gtdb_result": [
            {
                "accession": "GCF_002982115.1",
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                "total_fragments": 1443,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
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                "min_intra_species_ani": "98.91",
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                "num_clustered_genomes": 10,
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            },
            {
                "accession": "GCF_003049665.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
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                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
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                "mean_intra_species_ani": "99.28",
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            {
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            {
                "accession": "GCF_000392615.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "sphaericus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}