{
    "type": "genome",
    "identifier": "GCF_006539885.1",
    "organism": "Kocuria varians",
    "title": "Kocuria varians",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation Biological Resource Center",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006539885.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00097558",
        "wgs_master": "BJNW00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1272",
        "species_taxid": "1272",
        "organism_name": "Kocuria varians",
        "infraspecific_name": "strain=NBRC 15358",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/12",
        "asm_name": "ASM653988v1",
        "asm_submitter": "National Institute of Technology and Evaluation Biological Resource Center",
        "gbrs_paired_asm": "GCA_006539885.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/539/885/GCF_006539885.1_ASM653988v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2843576",
        "genome_size_ungapped": "2843576",
        "gc_percent": "70.500000",
        "replicon_count": "0",
        "scaffold_count": "48",
        "contig_count": "48",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006539885.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "2533",
        "protein_coding_gene_count": "2425",
        "non_coding_gene_count": "53",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-12",
    "dateModified": "2019-06-12",
    "datePublished": "2019-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kocuria varians"
        ],
        "sample_taxid": [
            "1272"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.767 MB",
        "sample_ph_range": {
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            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
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        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2843576",
        "Number of Sequences": "48",
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        "N50 (bp)": "111769",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "70.6",
        "Number of CDSs": "2510",
        "Average Protein Length": "336.9",
        "Coding Ratio (%)": "89.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
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            {
                "organism_name": "Kocuria tytonicola",
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                "ani_threshold": 95,
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            },
            {
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            },
            {
                "organism_name": "Arthrobacter stackebrandtii",
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                "status": "below_threshold"
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                "organism_name": "Sinomonas notoginsengisoli",
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            {
                "organism_name": "Garicola koreensis",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Cellulomonas palmilytica",
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                "accession": "GCA_021590045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Kocuria",
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        ]
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    "quality": 4,
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}