{ "type": "genome", "identifier": "GCF_006540165.1", "organism": "Brevibacillus borstelensis", "title": "Brevibacillus borstelensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006540165.1", "bioproject": "PRJNA224116", "biosample": "SAMD00097592", "wgs_master": "BJOK00000000.1", "refseq_category": "na", "taxid": "45462", "species_taxid": "45462", "organism_name": "Brevibacillus borstelensis", "infraspecific_name": "strain=NBRC 15714", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ASM654016v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_006540165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/540/165/GCF_006540165.1_ASM654016v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5240876", "genome_size_ungapped": "5240876", "gc_percent": "52.000000", "replicon_count": "0", "scaffold_count": "135", "contig_count": "135", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006540165.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "5152", "protein_coding_gene_count": "5003", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevibacillus borstelensis" ], "sample_taxid": [ "45462" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany:Borstel" ], "sample_host_location_id": [], "data_size": "1.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5240876", "Number of Sequences": "135", "Longest Sequences (bp)": "309708", "N50 (bp)": "114976", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "51.9", "Number of CDSs": "5108", "Average Protein Length": "293.1", "Coding Ratio (%)": "85.7", "Number of rRNAs": "0", "Number of tRNAs": "53", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevibacillus borstelensis", "strain": "strain=NBRC 15714", "accession": "GCA_006540165.1", "taxid": 45462, "species_taxid": 45462, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus choshinensis", "strain": "strain=DSM 8552", "accession": "GCA_001420695.1", "taxid": 54911, "species_taxid": 54911, "relation_to_type": "type", "validated": true, "ani": 77.9755, "matched_fragments": 308, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus invocatus", "strain": "strain=JCM 12215", "accession": "GCA_003710915.1", "taxid": 173959, "species_taxid": 173959, "relation_to_type": "type", "validated": true, "ani": 77.8789, "matched_fragments": 294, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus nitrificans", "strain": "strain=JCM 15774", "accession": "GCA_003710965.1", "taxid": 651560, "species_taxid": 651560, "relation_to_type": "type", "validated": true, "ani": 77.7604, "matched_fragments": 372, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus centrosporus", "strain": "strain=NBRC 15540", "accession": "GCA_006540045.1", "taxid": 54910, "species_taxid": 54910, "relation_to_type": "type", "validated": true, "ani": 77.7409, "matched_fragments": 356, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevibacillus fluminis", "strain": "strain=JCM 15716", "accession": "GCA_003710825.1", "taxid": 511487, "species_taxid": 511487, "relation_to_type": "type", "validated": true, "ani": 77.3014, "matched_fragments": 163, "total_fragments": 1687, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003710865.1", "gtdb_species": "s__Brevibacillus borstelensis", "ani": 99.9991, "matched_fragments": 1677, "total_fragments": 1687, "gtdb_taxonomy": 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