{
    "type": "genome",
    "identifier": "GCF_006540205.1",
    "organism": "Lysinibacillus fusiformis",
    "title": "Lysinibacillus fusiformis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "National Institute of Technology and Evaluation",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006540205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00097594",
        "wgs_master": "BJOM00000000.1",
        "refseq_category": "na",
        "taxid": "28031",
        "species_taxid": "28031",
        "organism_name": "Lysinibacillus fusiformis",
        "infraspecific_name": "strain=NBRC 15717",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/06/12",
        "asm_name": "ASM654020v1",
        "asm_submitter": "National Institute of Technology and Evaluation",
        "gbrs_paired_asm": "GCA_006540205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/540/205/GCF_006540205.1_ASM654020v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4763064",
        "genome_size_ungapped": "4763064",
        "gc_percent": "37.500000",
        "replicon_count": "0",
        "scaffold_count": "71",
        "contig_count": "71",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006540205.1-RS_2024_08_26",
        "annotation_date": "2024-08-26",
        "total_gene_count": "4749",
        "protein_coding_gene_count": "4602",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-06-12",
    "dateModified": "2019-06-12",
    "datePublished": "2019-06-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lysinibacillus fusiformis"
        ],
        "sample_taxid": [
            "28031"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.353 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4763064",
        "Number of Sequences": "71",
        "Longest Sequences (bp)": "522571",
        "N50 (bp)": "192848",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "37.3",
        "Number of CDSs": "4749",
        "Average Protein Length": "283.6",
        "Coding Ratio (%)": "84.8",
        "Number of rRNAs": "1",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Lysinibacillus fusiformis",
                "strain": "strain=NBRC 15717",
                "accession": "GCA_006540205.1",
                "taxid": 28031,
                "species_taxid": 28031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1548,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus fusiformis",
                "strain": "strain=ATCC 7055",
                "accession": "GCA_003049525.1",
                "taxid": 28031,
                "species_taxid": 28031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9998,
                "matched_fragments": 1549,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus fusiformis",
                "strain": "strain=NRRL NRS-350",
                "accession": "GCA_003367495.1",
                "taxid": 28031,
                "species_taxid": 28031,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9797,
                "matched_fragments": 1522,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Lysinibacillus cavernae",
                "strain": "strain=SYSU K30005",
                "accession": "GCA_009724685.1",
                "taxid": 2666135,
                "species_taxid": 2666135,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6773,
                "matched_fragments": 1215,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus capsici",
                "strain": "strain=PB300",
                "accession": "GCA_003367505.1",
                "taxid": 2115968,
                "species_taxid": 2115968,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8289,
                "matched_fragments": 1150,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus boronitolerans",
                "strain": "strain=NBRC 103108",
                "accession": "GCA_000772935.1",
                "taxid": 309788,
                "species_taxid": 309788,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.817,
                "matched_fragments": 1116,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lysinibacillus contaminans",
                "strain": "strain=DSM 25560",
                "accession": "GCA_001278945.1",
                "taxid": 1293441,
                "species_taxid": 1293441,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7077,
                "matched_fragments": 499,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus merdavium",
                "strain": "strain=Sa1YVA6",
                "accession": "GCA_014836935.1",
                "taxid": 2762218,
                "species_taxid": 2762218,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1574,
                "matched_fragments": 195,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Solibacillus faecavium",
                "strain": "strain=A46",
                "accession": "GCA_014836905.1",
                "taxid": 2762221,
                "species_taxid": 2762221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.055,
                "matched_fragments": 196,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus mycoides",
                "strain": "strain=DSM 2048",
                "accession": "GCA_022630575.1",
                "taxid": 1405,
                "species_taxid": 1405,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.6459,
                "matched_fragments": 74,
                "total_fragments": 1551,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_003049525.1",
                "gtdb_species": "s__Lysinibacillus fusiformis",
                "ani": 99.9998,
                "matched_fragments": 1549,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.17",
                "min_intra_species_ani": "95.55",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 32,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001629735.1",
                "gtdb_species": "s__Lysinibacillus sphaericus_A",
                "ani": 93.0267,
                "matched_fragments": 1329,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.64",
                "min_intra_species_ani": "99.33",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 29,
                "status": "-"
            },
            {
                "accession": "GCF_001308875.1",
                "gtdb_species": "s__Lysinibacillus sp001308875",
                "ani": 89.6424,
                "matched_fragments": 1282,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009724685.1",
                "gtdb_species": "s__Lysinibacillus sp009724685",
                "ani": 85.6773,
                "matched_fragments": 1215,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002845985.1",
                "gtdb_species": "s__Lysinibacillus fusiformis_D",
                "ani": 85.4897,
                "matched_fragments": 1189,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.12",
                "min_intra_species_ani": "98.25",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_016925635.1",
                "gtdb_species": "s__Lysinibacillus fusiformis_F",
                "ani": 85.1257,
                "matched_fragments": 1178,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003367505.1",
                "gtdb_species": "s__Lysinibacillus capsici",
                "ani": 84.8289,
                "matched_fragments": 1150,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.1183,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "96.58",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCF_006864135.1",
                "gtdb_species": "s__Lysinibacillus sp006864135",
                "ani": 81.7976,
                "matched_fragments": 848,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Lysinibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.97",
                "min_intra_species_ani": "95.97",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002360295.1",
                "gtdb_species": "s__Metasolibacillus sp002360295",
                "ani": 77.6891,
                "matched_fragments": 217,
                "total_fragments": 1551,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Metasolibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.466,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 31.818,
        "optimum_ph": 7.75,
        "genome_size": 4756878.636,
        "gc_content": 37.382,
        "coding_genes": 4525.0,
        "rRNA16S_genes": 13.0,
        "tRNA_genes": 107.0,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Lysinibacillus",
        "fusiformis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}