{ "type": "genome", "identifier": "GCF_006542665.1", "organism": "Alistipes communis", "title": "Alistipes communis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006542665.1", "bioproject": "PRJNA224116", "biosample": "SAMD00166231", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2585118", "species_taxid": "2585118", "organism_name": "Alistipes communis", "infraspecific_name": "strain=5CBH24", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "Acom_1.0", "asm_submitter": "Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN", "gbrs_paired_asm": "GCA_006542665.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/542/665/GCF_006542665.1_Acom_1.0", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3301347", "genome_size_ungapped": "3301347", "gc_percent": "58.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006542665.1-RS_2025_01_08", "annotation_date": "2025-01-08", "total_gene_count": "2738", "protein_coding_gene_count": "2654", "non_coding_gene_count": "58", "pubmed_id": "31633480" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Alistipes communis" ], "sample_taxid": [ "2585118" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.923 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3301347", "Number of Sequences": "1", "Longest Sequences (bp)": "3301347", "N50 (bp)": "3301347", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "2675", "Average Protein Length": "359.8", "Coding Ratio (%)": "87.5", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alistipes communis", "strain": "strain=5CBH24", "accession": "GCA_006542665.1", "taxid": 2585118, "species_taxid": 2585118, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_000374505.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 80.7443, "matched_fragments": 426, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_025145285.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 80.7101, "matched_fragments": 429, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes finegoldii", "strain": "strain=DSM 17242", "accession": "GCA_000265365.1", "taxid": 214856, "species_taxid": 214856, "relation_to_type": "type", "validated": true, "ani": 80.1121, "matched_fragments": 441, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii subsp. vulgaris", "strain": "strain=3BBH6", "accession": "GCA_006542645.1", "taxid": 2585117, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 79.9436, "matched_fragments": 411, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes megaguti", "strain": "strain=Marseille-P5997", "accession": "GCA_900604385.1", "taxid": 2364787, "species_taxid": 2364787, "relation_to_type": "type", "validated": true, "ani": 79.9107, "matched_fragments": 377, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes montrealensis", "strain": "strain=kh20", "accession": "GCA_018362775.1", "taxid": 2834113, "species_taxid": 2834113, "relation_to_type": "type", "validated": true, "ani": 79.5642, "matched_fragments": 418, "total_fragments": 1100, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes ihumii", 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