{ "type": "genome", "identifier": "GCF_006542765.1", "organism": "Paenibacillus luteus", "title": "Paenibacillus luteus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006542765.1", "bioproject": "PRJNA224116", "biosample": "SAMN11053862", "wgs_master": "SKCD00000000.1", "refseq_category": "reference genome", "taxid": "2545753", "species_taxid": "2545753", "organism_name": "Paenibacillus luteus", "infraspecific_name": "strain=R-3", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/19", "asm_name": "ASM654276v1", "asm_submitter": "Beijing Institute of Technology", "gbrs_paired_asm": "GCA_006542765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/542/765/GCF_006542765.1_ASM654276v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8511810", "genome_size_ungapped": "8511424", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "97", "contig_count": "97", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006542765.1-RS_2024_04_03", "annotation_date": "2024-04-03", "total_gene_count": "7185", "protein_coding_gene_count": "6968", "non_coding_gene_count": "118", "pubmed_id": "31140964" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-19", "dateModified": "2019-04-19", "datePublished": "2019-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus luteus" ], "sample_taxid": [ "2545753" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.428 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8511810", "Number of Sequences": "97", "Longest Sequences (bp)": "801082", "N50 (bp)": "197722", "Gap Ratio (%)": "0.004641", "GCcontent (%)": "46.9", "Number of CDSs": "7136", "Average Protein Length": "347.4", "Coding Ratio (%)": "87.4", "Number of rRNAs": "4", "Number of tRNAs": "88", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus luteus", "strain": "strain=R-3", "accession": "GCA_006542765.1", "taxid": 2545753, "species_taxid": 2545753, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2789, "total_fragments": 2794, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus paridis", "strain": "strain=py1325", "accession": "GCA_006345825.1", "taxid": 2583376, "species_taxid": 2583376, "relation_to_type": "type", "validated": true, "ani": 93.6293, "matched_fragments": 2179, "total_fragments": 2794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sinopodophylli", "strain": "strain=CCTCC AB 2016047", "accession": "GCA_005930355.1", "taxid": 1837342, "species_taxid": 1837342, "relation_to_type": "type", "validated": true, "ani": 82.3008, "matched_fragments": 1124, "total_fragments": 2794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus endophyticus", "strain": "strain=CECT 8234", "accession": "GCA_014192395.1", "taxid": 1294268, "species_taxid": 1294268, "relation_to_type": "type", "validated": true, "ani": 81.7815, "matched_fragments": 1048, "total_fragments": 2794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus alkaliterrae", "strain": "strain=DSM 17040", "accession": "GCA_021532375.1", "taxid": 320909, "species_taxid": 320909, "relation_to_type": "type", "validated": true, "ani": 80.1093, "matched_fragments": 586, "total_fragments": 2794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus castaneae", "strain": "strain=DSM 19417", "accession": "GCA_002884445.1", "taxid": 474957, "species_taxid": 474957, "relation_to_type": "type", "validated": true, "ani": 80.1023, "matched_fragments": 684, "total_fragments": 2794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus prosopidis", "strain": "strain=CECT 7506", "accession": "GCA_003337375.1", "taxid": 630520, "species_taxid": 630520, "relation_to_type": "type", "validated": true, "ani": 80.0414, "matched_fragments": 671, "total_fragments": 2794, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus castaneae", 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