{ "type": "genome", "identifier": "GCF_006543045.1", "organism": "Salinadaptatus halalkaliphilus", "title": "Salinadaptatus halalkaliphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese academy of science", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006543045.1", "bioproject": "PRJNA224116", "biosample": "SAMN10181221", "wgs_master": "RBZW00000000.1", "refseq_category": "reference genome", "taxid": "2419781", "species_taxid": "2419781", "organism_name": "Salinadaptatus halalkaliphilus", "infraspecific_name": "strain=XQ-INN 246", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/04/19", "asm_name": "ASM654304v1", "asm_submitter": "Chinese academy of science", "gbrs_paired_asm": "GCA_006543045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/543/045/GCF_006543045.1_ASM654304v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "4521535", "genome_size_ungapped": "4520784", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006543045.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4485", "protein_coding_gene_count": "4275", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-04-19", "dateModified": "2019-04-19", "datePublished": "2019-04-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinadaptatus halalkaliphilus" ], "sample_taxid": [ "2419781" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Inner Mongolia" ], "sample_host_location_id": [], "data_size": "1.258 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4521535", "Number of Sequences": "77", "Longest Sequences (bp)": "459171", "N50 (bp)": "154185", "Gap Ratio (%)": "0.016609", "GCcontent (%)": "62.1", "Number of CDSs": "4312", "Average Protein Length": "294.9", "Coding Ratio (%)": "84.4", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopiger xanaduensis", "strain": "strain=SH-6", "accession": "GCA_000217715.1", "taxid": 387343, "species_taxid": 387343, 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