{ "type": "genome", "identifier": "GCF_006546625.1", "organism": "Haloflavibacter putidus", "title": "Haloflavibacter putidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006546625.1", "bioproject": "PRJNA224116", "biosample": "SAMN12135226", "wgs_master": "VIAR00000000.1", "refseq_category": "reference genome", "taxid": "2576776", "species_taxid": "2576776", "organism_name": "Haloflavibacter putidus", "infraspecific_name": "strain=PLHSN227", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/02", "asm_name": "ASM654662v1", "asm_submitter": "Shandong university", "gbrs_paired_asm": "GCA_006546625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/546/625/GCF_006546625.1_ASM654662v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2923547", "genome_size_ungapped": "2923547", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "53", "contig_count": "53", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006546625.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "2683", "protein_coding_gene_count": "2616", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-02", "dateModified": "2019-07-02", "datePublished": "2019-07-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Haloflavibacter putidus" ], "sample_taxid": [ "2576776" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yantai" ], "sample_host_location_id": [], "data_size": "0.815 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2923547", "Number of Sequences": "53", "Longest Sequences (bp)": "471476", "N50 (bp)": "210885", "Gap Ratio (%)": "0.000171", "GCcontent (%)": "35.6", "Number of CDSs": "2596", "Average Protein Length": "328.1", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Haloflavibacter putidus", "strain": "strain=PLHSN227", "accession": "GCA_006546625.1", "taxid": 2576776, "species_taxid": 2576776, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 958, "total_fragments": 958, "ani_threshold": 95, 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958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 76.2619, "matched_fragments": 69, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroflexus planctonicus", "strain": "strain=CGMCC 1.12931", "accession": "GCA_014640195.1", "taxid": 1526575, "species_taxid": 1526575, "relation_to_type": "type", "validated": true, "ani": 76.2321, "matched_fragments": 100, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Croceivirga radicis", "strain": "strain=HSG9", "accession": "GCA_002072105.2", "taxid": 1929488, "species_taxid": 1929488, "relation_to_type": "type", "validated": true, "ani": 75.9935, "matched_fragments": 65, "total_fragments": 958, "ani_threshold": 95, "status": "below_threshold" }, { 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