{
    "type": "genome",
    "identifier": "GCF_006546835.1",
    "organism": "Actinomyces johnsonii",
    "title": "Actinomyces johnsonii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Gothenburg - CCUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006546835.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12142209",
        "wgs_master": "VICB00000000.1",
        "refseq_category": "reference genome",
        "taxid": "544581",
        "species_taxid": "544581",
        "organism_name": "Actinomyces johnsonii",
        "infraspecific_name": "strain=CCUG 34287",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/02",
        "asm_name": "ASM654683v1",
        "asm_submitter": "University of Gothenburg - CCUG",
        "gbrs_paired_asm": "GCA_006546835.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/546/835/GCF_006546835.1_ASM654683v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3348294",
        "genome_size_ungapped": "3347674",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "42",
        "contig_count": "42",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006546835.1-RS_2024_04_27",
        "annotation_date": "2024-04-27",
        "total_gene_count": "2843",
        "protein_coding_gene_count": "2759",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-02",
    "dateModified": "2019-07-02",
    "datePublished": "2019-07-02",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces johnsonii"
        ],
        "sample_taxid": [
            "544581"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "Unknown"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.923 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3348294",
        "Number of Sequences": "42",
        "Longest Sequences (bp)": "515002",
        "N50 (bp)": "360496",
        "Gap Ratio (%)": "0.018696",
        "GCcontent (%)": "67.5",
        "Number of CDSs": "2832",
        "Average Protein Length": "342.8",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "10"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Actinomyces johnsonii",
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                "species_taxid": 544581,
                "relation_to_type": "type",
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                "total_fragments": 1096,
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            {
                "organism_name": "Actinomyces johnsonii",
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                "accession": "GCA_008693165.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "ani_threshold": 95,
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            {
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
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                "accession": "GCA_004525795.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_900637975.1",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Actinomyces oris",
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                "accession": "GCA_016127955.1",
                "taxid": 544580,
                "species_taxid": 544580,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Actinomyces marmotae",
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                "accession": "GCA_009829655.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces denticolens",
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                "species_taxid": 52767,
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                "ani": 81.0877,
                "matched_fragments": 470,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia wutianyii",
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                "species_taxid": 2585135,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Ruania suaedae",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oerskovia rustica",
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                "accession": "GCA_014836555.1",
                "taxid": 2762237,
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                "ani": 77.0017,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_006546835.1",
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}