{ "type": "genome", "identifier": "GCF_006547045.1", "organism": "Marilutibacter alkalisoli", "title": "Marilutibacter alkalisoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006547045.1", "bioproject": "PRJNA224116", "biosample": "SAMN12136107", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2591633", "species_taxid": "2591633", "organism_name": "Marilutibacter alkalisoli", "infraspecific_name": "strain=SJ-36", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/03", "asm_name": "ASM654704v1", "asm_submitter": "Inner Mongolia University", "gbrs_paired_asm": "GCA_006547045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/547/045/GCF_006547045.1_ASM654704v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3857091", "genome_size_ungapped": "3857091", "gc_percent": "66.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006547045.1-RS_2024_12_01", "annotation_date": "2024-12-01", "total_gene_count": "3448", "protein_coding_gene_count": "3294", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-03", "dateModified": "2019-07-03", "datePublished": "2019-07-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Marilutibacter alkalisoli" ], "sample_taxid": [ "2591633" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Inner Mongolia" ], "sample_host_location_id": [], "data_size": "1.051 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3857091", "Number of Sequences": "1", "Longest Sequences (bp)": "3857091", "N50 (bp)": "3857091", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "3457", "Average Protein Length": "331.5", "Coding Ratio (%)": "89.1", "Number of rRNAs": "6", "Number of tRNAs": "51", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lysobacter alkalisoli", "strain": "strain=SJ-36", "accession": "GCA_006547045.1", "taxid": 2591633, "species_taxid": 2591633, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1285, "total_fragments": 1285, 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80.9447, "matched_fragments": 634, "total_fragments": 1285, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006547045.1", "gtdb_species": "s__Lysobacter alkalisoli", "ani": 100.0, "matched_fragments": 1285, "total_fragments": 1285, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006546735.2", "gtdb_species": "s__Lysobacter maris", "ani": 84.7166, "matched_fragments": 754, "total_fragments": 1285, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter", 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