{ "type": "genome", "identifier": "GCF_006636205.1", "organism": "Kitasatospora acidiphila", "title": "Kitasatospora acidiphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chungnam National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006636205.1", "bioproject": "PRJNA224116", "biosample": "SAMN11394123", "wgs_master": "VIGB00000000.1", "refseq_category": "reference genome", "taxid": "2567942", "species_taxid": "2567942", "organism_name": "Kitasatospora acidiphila", "infraspecific_name": "strain=MMS16-CNU292", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/04", "asm_name": "ASM663620v1", "asm_submitter": "Chungnam National University", "gbrs_paired_asm": "GCA_006636205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/636/205/GCF_006636205.1_ASM663620v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8581260", "genome_size_ungapped": "8581260", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006636205.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "7985", "protein_coding_gene_count": "7369", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-04", "dateModified": "2019-07-04", "datePublished": "2019-07-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora acidiphila" ], "sample_taxid": [ "2567942" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Oncheon 2-dong 216-3, Yuseong-gu, Daejeon Metropolitan City" ], "sample_host_location_id": [], "data_size": "2.282 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 5.21, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8581260", "Number of Sequences": "3", "Longest Sequences (bp)": "8297640", "N50 (bp)": "8297640", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.5", "Number of CDSs": "8155", "Average Protein Length": "307.2", "Coding Ratio (%)": "87.6", "Number of rRNAs": "30", "Number of tRNAs": "95", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2856, "total_fragments": 2858, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": "GCA_020907985.1", "taxid": 2893891, "species_taxid": 2893891, "relation_to_type": "type", "validated": true, "ani": 91.6902, "matched_fragments": 1914, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora viridis", "strain": "strain=DSM 44826", "accession": "GCA_007829815.1", "taxid": 281105, "species_taxid": 281105, "relation_to_type": "type", "validated": true, "ani": 86.3072, "matched_fragments": 1845, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora azatica", "strain": "strain=KCTC 9699", "accession": "GCA_000744785.1", "taxid": 58347, "species_taxid": 58347, "relation_to_type": "type", "validated": true, "ani": 85.9639, "matched_fragments": 1613, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora kifunensis", "strain": "strain=DSM 41654", "accession": "GCA_014203855.1", "taxid": 58351, "species_taxid": 58351, "relation_to_type": "type", "validated": true, "ani": 84.881, "matched_fragments": 1705, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora gansuensis", "strain": "strain=DSM 44786", "accession": "GCA_014203705.1", "taxid": 258050, "species_taxid": 258050, "relation_to_type": "type", "validated": true, "ani": 82.794, "matched_fragments": 1370, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 82.6145, "matched_fragments": 1470, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 82.373, "matched_fragments": 1430, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubrisoli", "strain": "strain=DSM 42083", "accession": "GCA_024436055.1", "taxid": 1387313, "species_taxid": 1387313, "relation_to_type": "type", "validated": true, "ani": 79.6856, "matched_fragments": 930, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 79.1567, "matched_fragments": 982, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus tenebrarius", "strain": "strain=DSM 40477", "accession": "GCA_024171885.1", "taxid": 1933, "species_taxid": 1933, "relation_to_type": "type", "validated": true, "ani": 76.6949, "matched_fragments": 647, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptoalloteichus hindustanus", "strain": "strain=DSM 44523", "accession": "GCA_900129375.1", "taxid": 2017, "species_taxid": 2017, "relation_to_type": "type", "validated": true, "ani": 76.6757, "matched_fragments": 688, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 76.5601, "matched_fragments": 671, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia thailandica", "strain": "strain=NBRC 100428", "accession": "GCA_000308795.1", "taxid": 257275, "species_taxid": 257275, "relation_to_type": "type", "validated": true, "ani": 76.3309, "matched_fragments": 596, "total_fragments": 2858, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 5.21, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002846355.1", "gtdb_species": "s__Kitasatospora sp002846355", "ani": 96.054, "matched_fragments": 2383, "total_fragments": 2858, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.05", "min_intra_species_ani": "96.05", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_007829815.1", "gtdb_species": "s__Kitasatospora viridis", "ani": 86.3213, "matched_fragments": 1842, "total_fragments": 2858, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744785.1", "gtdb_species": "s__Kitasatospora azatica", "ani": 85.9464, "matched_fragments": 1616, "total_fragments": 2858, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003205575.1", "gtdb_species": "s__Kitasatospora tateyamensis", "ani": 85.4898, "matched_fragments": 1473, "total_fragments": 2858, 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Kitasatospora", "acidiphila" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }