{ "type": "genome", "identifier": "GCF_006711645.1", "organism": "Klebsiella electrica", "title": "Klebsiella electrica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Leibniz Institute DSMZ", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006711645.1", "bioproject": "PRJNA224116", "biosample": "SAMN12125603", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1259973", "species_taxid": "1259973", "organism_name": "Klebsiella electrica", "infraspecific_name": "strain=DSM 102253", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671164v1", "asm_submitter": "Leibniz Institute DSMZ", "gbrs_paired_asm": "GCA_006711645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/711/645/GCF_006711645.1_ASM671164v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5785203", "genome_size_ungapped": "5785203", "gc_percent": "55.000000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006711645.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "5602", "protein_coding_gene_count": "5308", "non_coding_gene_count": "116", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Klebsiella electrica" ], "sample_taxid": [ "1259973" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.633 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5785203", "Number of Sequences": "6", "Longest Sequences (bp)": "5266426", "N50 (bp)": "5266426", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.1", "Number of CDSs": "5421", "Average Protein Length": "305.2", "Coding Ratio (%)": "85.8", "Number of rRNAs": "25", "Number of tRNAs": "88", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Raoultella electrica", "strain": "strain=DSM 102253", "accession": "GCA_006711645.1", "taxid": 1259973, "species_taxid": 1259973, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1924, "total_fragments": 1925, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Raoultella ornithinolytica", "strain": "strain=NBRC 105727", "accession": "GCA_001598295.1", "taxid": 54291, "species_taxid": 54291, "relation_to_type": "type", "validated": true, "ani": 93.8458, "matched_fragments": 1444, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultella planticola", "strain": "strain=ATCC 33531", "accession": "GCA_000735435.1", "taxid": 575, "species_taxid": 575, "relation_to_type": "type", "validated": true, "ani": 93.5136, "matched_fragments": 1455, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Raoultella terrigena", "strain": "strain=NBRC 14941", "accession": "GCA_006539725.1", "taxid": 577, "species_taxid": 577, "relation_to_type": "type", "validated": true, "ani": 85.9862, "matched_fragments": 1305, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=DSM 25444", "accession": "GCA_002925905.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 85.0822, "matched_fragments": 1332, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella michiganensis", "strain": "strain=CCUG 66515", "accession": "GCA_009173485.1", "taxid": 1134687, "species_taxid": 1134687, "relation_to_type": "type", "validated": true, "ani": 84.8866, "matched_fragments": 1316, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pasteurii", "strain": "", "accession": "GCA_902158725.1", "taxid": 2587529, "species_taxid": 2587529, "relation_to_type": "type", "validated": true, "ani": 84.506, "matched_fragments": 1272, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella huaxiensis", "strain": "strain=WCHKl090001", "accession": "GCA_003261575.2", "taxid": 2153354, "species_taxid": 2153354, "relation_to_type": "type", "validated": true, "ani": 84.3344, "matched_fragments": 1220, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=NBRC 105695", "accession": "GCA_001598695.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 84.3247, "matched_fragments": 1200, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella oxytoca", "strain": "strain=DSM 5175", "accession": "GCA_020115535.1", "taxid": 571, "species_taxid": 571, "relation_to_type": "type", "validated": true, "ani": 84.2493, "matched_fragments": 1197, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae", "strain": "strain=PartO-Kpneumoniae-RM8376", "accession": "GCA_022869665.1", "taxid": 573, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 83.9574, "matched_fragments": 1208, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Klebsiella pneumoniae subsp. pneumoniae", "strain": "strain=ATCC 13883", "accession": "GCA_000788015.1", "taxid": 72407, "species_taxid": 573, "relation_to_type": "type", "validated": true, "ani": 83.9385, "matched_fragments": 1204, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 81.8243, "matched_fragments": 899, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter rodentium", "strain": "strain=DSM 16636", "accession": "GCA_021278985.1", "taxid": 67825, "species_taxid": 67825, "relation_to_type": "type", "validated": true, "ani": 81.5466, "matched_fragments": 864, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 81.5023, "matched_fragments": 899, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Citrobacter arsenatis", "strain": "strain=LY-1", "accession": "GCA_004353845.1", "taxid": 2546350, "species_taxid": 2546350, "relation_to_type": "type", "validated": true, "ani": 81.4051, "matched_fragments": 804, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 81.3038, "matched_fragments": 901, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia oryzae", "strain": "strain=Ola 51", "accession": "GCA_001658025.2", "taxid": 497725, "species_taxid": 497725, "relation_to_type": "type", "validated": true, "ani": 80.9394, "matched_fragments": 902, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia oryzae", "strain": "strain=CGMCC 1.7012", "accession": "GCA_900112145.1", "taxid": 497725, "species_taxid": 497725, "relation_to_type": "type", "validated": true, "ani": 80.8081, "matched_fragments": 880, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kosakonia arachidis", "strain": "strain=Ah-143", "accession": "GCA_900116535.1", "taxid": 551989, "species_taxid": 551989, "relation_to_type": "type", "validated": true, "ani": 80.2042, "matched_fragments": 818, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mixta gaviniae", "strain": "strain=DSM 22758", "accession": "GCA_002953195.1", "taxid": 665914, "species_taxid": 665914, "relation_to_type": "type", "validated": true, "ani": 79.1237, "matched_fragments": 569, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea cypripedii", "strain": "strain=LMG 2657", "accession": "GCA_002095535.1", "taxid": 55209, "species_taxid": 55209, "relation_to_type": "type", "validated": true, "ani": 78.5513, "matched_fragments": 520, "total_fragments": 1925, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006711645.1", "gtdb_species": "s__Klebsiella electrica", "ani": 100.0, "matched_fragments": 1924, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.88", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "inconclusive" }, { "accession": "GCA_009929615.1", "gtdb_species": "s__Frisingicoccus sp009929615", "ani": 97.0996, "matched_fragments": 62, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Frisingicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.91", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "inconclusive" }, { "accession": "GCF_001598295.1", "gtdb_species": "s__Klebsiella ornithinolytica", "ani": 93.8405, "matched_fragments": 1446, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.7194, "mean_intra_species_ani": "99.42", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.81", "num_clustered_genomes": 95, "status": "-" }, { "accession": "GCF_000735435.1", "gtdb_species": "s__Klebsiella planticola", "ani": 93.5136, "matched_fragments": 1455, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.7194, "mean_intra_species_ani": "99.21", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.89", "num_clustered_genomes": 44, "status": "-" }, { "accession": "GCA_900759445.1", "gtdb_species": "s__Klebsiella sp900759445", "ani": 90.7234, "matched_fragments": 721, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004342285.1", "gtdb_species": "s__Klebsiella sp004342285", "ani": 88.1208, "matched_fragments": 1321, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014298075.1", "gtdb_species": "s__Klebsiella sp003752615", "ani": 87.4242, "matched_fragments": 1306, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.38", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002270295.1", "gtdb_species": "s__Klebsiella sp002270295", "ani": 86.2669, "matched_fragments": 1358, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014168815.1", "gtdb_species": "s__Kluyvera ascorbata_B", "ani": 83.0665, "matched_fragments": 1008, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "99.08", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_009363175.1", "gtdb_species": "s__Citrobacter_A telavivensis", "ani": 82.5533, "matched_fragments": 902, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000280495.2", "gtdb_species": "s__Kosakonia radicincitans", "ani": 82.1573, "matched_fragments": 973, "total_fragments": 1925, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia", "ani_circumscription_radius": 95.7299, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 14, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.073, "cell_length": 0.161, "doubling_h": 0.072, "growth_tmp": 33.764, "optimum_tmp": 33.514, "optimum_ph": 7.0, "genome_size": 5754114.408, "gc_content": 56.17, "coding_genes": 5508.809, "rRNA16S_genes": 7.971, "tRNA_genes": 85.856, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.25, "range_salinity": 0.0, "facultative_respiration": 0.2, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.8, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Klebsiella", "electrica" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }