{ "type": "genome", "identifier": "GCF_006715045.1", "organism": "Amycolatopsis cihanbeyliensis", "title": "Amycolatopsis cihanbeyliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006715045.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512385", "wgs_master": "VFML00000000.1", "refseq_category": "reference genome", "taxid": "1128664", "species_taxid": "1128664", "organism_name": "Amycolatopsis cihanbeyliensis", "infraspecific_name": "strain=DSM 45679", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671504v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006715045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/715/045/GCF_006715045.1_ASM671504v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7435439", "genome_size_ungapped": "7435439", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006715045.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "6831", "protein_coding_gene_count": "6671", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis cihanbeyliensis" ], "sample_taxid": [ "1128664" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.001 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7435439", "Number of Sequences": "2", "Longest Sequences (bp)": "6286745", "N50 (bp)": "6286745", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "6880", "Average Protein Length": "326.4", "Coding Ratio (%)": "90.6", "Number of rRNAs": "6", "Number of tRNAs": "60", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis cihanbeyliensis", "strain": "strain=DSM 45679", "accession": "GCA_006715045.1", "taxid": 1128664, "species_taxid": 1128664, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2477, "total_fragments": 2477, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 89.7902, "matched_fragments": 1968, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=CGMCC 4.5579", "accession": "GCA_900115565.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 81.1266, "matched_fragments": 1175, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis arida", "strain": "strain=DSM 45648", "accession": "GCA_004365925.1", "taxid": 587909, "species_taxid": 587909, "relation_to_type": "type", "validated": true, "ani": 81.0909, "matched_fragments": 1181, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis nigrescens", "strain": "strain=CSC17Ta-90", "accession": "GCA_000384315.1", "taxid": 381445, "species_taxid": 381445, "relation_to_type": "type", "validated": true, "ani": 80.6313, "matched_fragments": 1294, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis anabasis", "strain": "strain=EGI 650086", "accession": "GCA_009765355.1", "taxid": 1840409, "species_taxid": 1840409, "relation_to_type": "type", "validated": true, "ani": 80.1878, "matched_fragments": 1279, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis palatopharyngis", "strain": "strain=DSM 44832", "accession": "GCA_003385185.1", "taxid": 187982, "species_taxid": 187982, "relation_to_type": "type", "validated": true, "ani": 80.0899, "matched_fragments": 994, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis albispora", "strain": "strain=WP1", "accession": "GCA_003312875.1", "taxid": 1804986, "species_taxid": 1804986, "relation_to_type": "type", "validated": true, "ani": 80.0516, "matched_fragments": 1241, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_007993965.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 79.9505, "matched_fragments": 1084, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis magusensis", "strain": "strain=DSM 45510", "accession": "GCA_017875555.1", "taxid": 882444, "species_taxid": 882444, "relation_to_type": "type", "validated": true, "ani": 79.9484, "matched_fragments": 1186, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella muralis", "strain": "strain=DSM 45305", "accession": "GCA_003202285.1", "taxid": 588067, "species_taxid": 588067, "relation_to_type": "type", "validated": true, "ani": 79.9181, "matched_fragments": 1090, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 79.5789, "matched_fragments": 974, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.494, "matched_fragments": 991, "total_fragments": 2477, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharomonospora marina", "strain": "strain=XMU15", "accession": "GCA_000244955.1", 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