{ "type": "genome", "identifier": "GCF_006715055.1", "organism": "Lapillicoccus jejuensis", "title": "Lapillicoccus jejuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006715055.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512115", "wgs_master": "VFMN00000000.1", "refseq_category": "reference genome", "taxid": "402171", "species_taxid": "402171", "organism_name": "Lapillicoccus jejuensis", "infraspecific_name": "strain=DSM 18607", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671505v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006715055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/715/055/GCF_006715055.1_ASM671505v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4579077", "genome_size_ungapped": "4579077", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006715055.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4245", "protein_coding_gene_count": "4167", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Lapillicoccus jejuensis" ], "sample_taxid": [ "402171" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Jeju" ], "sample_host_location_id": [], "data_size": "1.182 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4579077", "Number of Sequences": "1", "Longest Sequences (bp)": "4579077", "N50 (bp)": "4579077", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "74.3", "Number of CDSs": "4260", "Average Protein Length": "331.7", "Coding Ratio (%)": "92.6", "Number of rRNAs": "6", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedococcus cremeus", "strain": "strain=CGMCC 1.6963", "accession": "GCA_900111375.1", "taxid": 587636, "species_taxid": 587636, "relation_to_type": "type", "validated": true, "ani": 79.6829, "matched_fragments": 654, "total_fragments": 1526, 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"accession": "GCA_002846495.1", "taxid": 173053, "species_taxid": 173053, "relation_to_type": "type", "validated": true, "ani": 79.2886, "matched_fragments": 628, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycicoccus flavus", "strain": "strain=CMS6Z-2", "accession": "GCA_004025965.2", "taxid": 2502783, "species_taxid": 2502783, "relation_to_type": "type", "validated": true, "ani": 79.193, "matched_fragments": 700, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Intrasporangium chromatireducens", "strain": "strain=Q5-1", "accession": "GCA_000576575.1", "taxid": 1386088, "species_taxid": 1386088, "relation_to_type": "type", "validated": true, "ani": 79.1168, "matched_fragments": 536, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Knoellia subterranea", "strain": "strain=KCTC 19937", "accession": "GCA_000768685.1", "taxid": 184882, 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