{ "type": "genome", "identifier": "GCF_006715175.1", "organism": "Curtobacterium citreum", "title": "Curtobacterium citreum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006715175.1", "bioproject": "PRJNA224116", "biosample": "SAMN11513125", "wgs_master": "VFMQ00000000.1", "refseq_category": "reference genome", "taxid": "2036", "species_taxid": "2036", "organism_name": "Curtobacterium citreum", "infraspecific_name": "strain=DSM 20528", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671517v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006715175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/715/175/GCF_006715175.1_ASM671517v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3612036", "genome_size_ungapped": "3612036", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006715175.1-RS_2024_04_23", "annotation_date": "2024-04-23", "total_gene_count": "3452", "protein_coding_gene_count": "3373", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Curtobacterium citreum" ], "sample_taxid": [ "2036" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.947 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3612036", "Number of Sequences": "1", "Longest Sequences (bp)": "3612036", "N50 (bp)": "3612036", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.9", "Number of CDSs": "3452", "Average Protein Length": "315.7", "Coding Ratio (%)": "90.5", "Number of rRNAs": "12", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Curtobacterium citreum", "strain": "strain=DSM 20528", "accession": "GCA_006715175.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1204, "total_fragments": 1204, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=LMG8786T", "accession": "GCA_024997915.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 99.9894, "matched_fragments": 1186, "total_fragments": 1204, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=JCM 1345", "accession": "GCA_014646735.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 99.9817, "matched_fragments": 1183, "total_fragments": 1204, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium albidum", "strain": "strain=DSM 20512", "accession": "GCA_013359825.1", "taxid": 50728, "species_taxid": 50728, "relation_to_type": "type", "validated": true, "ani": 97.2844, "matched_fragments": 1042, "total_fragments": 1204, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Curtobacterium luteum", "strain": "strain=JCM 1480", "accession": "GCA_014646995.1", "taxid": 33881, "species_taxid": 33881, "relation_to_type": "type", "validated": true, "ani": 85.9769, "matched_fragments": 911, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium luteum", "strain": "strain=ATCC 15830", "accession": "GCA_013359885.1", "taxid": 33881, "species_taxid": 33881, "relation_to_type": "type", "validated": true, "ani": 85.9489, "matched_fragments": 904, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium pusillum", "strain": "strain=ATCC 19096", "accession": "GCA_013359865.1", "taxid": 69373, "species_taxid": 69373, "relation_to_type": "suspected-type", "validated": true, "ani": 85.9416, "matched_fragments": 843, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium flaccumfaciens", "strain": "strain=LMG3645", "accession": "GCA_024997845.1", "taxid": 2035, "species_taxid": 2035, "relation_to_type": "suspected-type", "validated": true, "ani": 85.688, "matched_fragments": 912, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium allii", "strain": "strain=20TX0166", "accession": "GCA_021271025.1", "taxid": 2878384, "species_taxid": 2878384, "relation_to_type": "type", "validated": true, "ani": 85.5018, "matched_fragments": 909, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium herbarum", "strain": "strain=DSM 14013", "accession": "GCA_016907335.1", "taxid": 150122, "species_taxid": 150122, "relation_to_type": "suspected-type", "validated": true, "ani": 84.7413, "matched_fragments": 863, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium herbarum", "strain": "strain=LMG19917T", "accession": "GCA_025000405.1", "taxid": 150122, "species_taxid": 150122, "relation_to_type": "suspected-type", "validated": true, "ani": 84.6735, "matched_fragments": 846, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 1.39, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_006715175.1", "gtdb_species": "s__Curtobacterium citreum", "ani": 100.0, "matched_fragments": 1203, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.94", "min_intra_species_ani": "96.06", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 10, "status": "conclusive" }, { "accession": "GCF_001705035.1", "gtdb_species": "s__Curtobacterium sp001705035", "ani": 88.1069, "matched_fragments": 868, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "98.72", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003989515.1", "gtdb_species": "s__Curtobacterium sp003989515", "ani": 87.9054, "matched_fragments": 834, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_005490985.1", "gtdb_species": "s__Curtobacterium oceanosedimentum", "ani": 87.8997, "matched_fragments": 954, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.58", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001742745.1", "gtdb_species": "s__Curtobacterium sp001742745", "ani": 87.6886, "matched_fragments": 908, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.38", "min_intra_species_ani": "97.38", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000772085.1", "gtdb_species": "s__Curtobacterium sp000772085", "ani": 87.5404, "matched_fragments": 951, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.95", "min_intra_species_ani": "98.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003234175.1", "gtdb_species": "s__Curtobacterium sp003234175", "ani": 87.4984, "matched_fragments": 919, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003234185.1", "gtdb_species": "s__Curtobacterium sp003234185", "ani": 87.4776, "matched_fragments": 872, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001806325.1", "gtdb_species": "s__Curtobacterium sp001806325", "ani": 86.3198, "matched_fragments": 926, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_007680845.1", "gtdb_species": "s__Curtobacterium pusillum_B", "ani": 85.9176, "matched_fragments": 886, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018885305.1", "gtdb_species": "s__Curtobacterium sp018885305", "ani": 84.6728, "matched_fragments": 839, "total_fragments": 1204, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Curtobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 25.5, "optimum_ph": 4.0, "genome_size": 3431450.0, "gc_content": 69.122, "coding_genes": 4390.0, "rRNA16S_genes": 3.0, "tRNA_genes": 84.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Curtobacterium", "citreum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }