{ "type": "genome", "identifier": "GCF_006715765.1", "organism": "Rarobacter incanus", "title": "Rarobacter incanus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006715765.1", "bioproject": "PRJNA224116", "biosample": "SAMN11511982", "wgs_master": "VFNV00000000.1", "refseq_category": "reference genome", "taxid": "153494", "species_taxid": "153494", "organism_name": "Rarobacter incanus", "infraspecific_name": "strain=DSM 10596", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671576v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006715765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/715/765/GCF_006715765.1_ASM671576v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2486262", "genome_size_ungapped": "2486262", "gc_percent": "64.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006715765.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2095", "protein_coding_gene_count": "2013", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Rarobacter incanus" ], "sample_taxid": [ "153494" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.691 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2486262", "Number of Sequences": "1", "Longest Sequences (bp)": "2486262", "N50 (bp)": "2486262", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.7", "Number of CDSs": "2079", "Average Protein Length": "355.2", "Coding Ratio (%)": "89.1", "Number of rRNAs": "9", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rarobacter incanus", "strain": "strain=DSM 10596", "accession": "GCA_006715765.1", "taxid": 153494, "species_taxid": 153494, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 827, "total_fragments": 828, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rarobacter faecitabidus", "strain": "strain=DSM 4813", "accession": "GCA_006716265.1", "taxid": 13243, "species_taxid": 13243, "relation_to_type": "type", "validated": true, "ani": 79.1126, "matched_fragments": 242, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sanguibacter antarcticus", "strain": "strain=DSM 18966", "accession": "GCA_002564005.1", "taxid": 372484, "species_taxid": 372484, "relation_to_type": "type", "validated": true, "ani": 77.4815, "matched_fragments": 98, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium excoecariae", "strain": "strain=CBS5P-1", "accession": "GCA_011326725.1", "taxid": 2715210, "species_taxid": 2715210, "relation_to_type": "type", "validated": true, "ani": 77.1749, "matched_fragments": 59, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=DSM 9581", "accession": "GCA_014201095.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 77.1113, "matched_fragments": 150, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=NBRC 104118", "accession": "GCA_001570825.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0688, "matched_fragments": 147, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium funkei", "strain": "strain=JCM 14302", "accession": "GCA_004519295.1", "taxid": 264251, "species_taxid": 264251, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0568, "matched_fragments": 145, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia soli", "strain": "strain=DSM 21838", "accession": "GCA_002563695.1", "taxid": 638953, "species_taxid": 638953, "relation_to_type": "type", "validated": true, "ani": 76.9678, "matched_fragments": 89, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium herbarum", "strain": "strain=DSM 14013", "accession": "GCA_016907335.1", "taxid": 150122, "species_taxid": 150122, "relation_to_type": "suspected-type", "validated": true, "ani": 76.9284, "matched_fragments": 61, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 76.8789, "matched_fragments": 132, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminihabitans luteus", "strain": "strain=NBRC 108568", "accession": "GCA_016863455.1", "taxid": 1138585, "species_taxid": 1138585, "relation_to_type": "type", "validated": true, "ani": 76.8756, "matched_fragments": 153, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=NRRL B-8019", "accession": "GCA_000718325.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 76.8347, "matched_fragments": 133, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 76.8104, "matched_fragments": 140, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas hominis", "strain": "strain=NBRC 16055", "accession": "GCA_007989225.1", "taxid": 156981, "species_taxid": 156981, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8082, "matched_fragments": 144, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia turbata", "strain": "strain=JCM3160", "accession": "GCA_004121315.1", "taxid": 1713, "species_taxid": 1713, "relation_to_type": "type", "validated": true, "ani": 76.8034, "matched_fragments": 133, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium sediminis", "strain": "strain=YLB-01", "accession": "GCA_004564075.1", "taxid": 904291, "species_taxid": 904291, "relation_to_type": "type", "validated": true, "ani": 76.7298, "matched_fragments": 59, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, "species_taxid": 2306636, "relation_to_type": "type", "validated": true, "ani": 76.6404, "matched_fragments": 149, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas avistercoris", "strain": "strain=Sa3CUA2", "accession": "GCA_014836445.1", "taxid": 2762242, "species_taxid": 2762242, "relation_to_type": "type", "validated": true, "ani": 76.6264, "matched_fragments": 134, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Beutenbergia cavernae", "strain": "strain=DSM 12333", "accession": "GCA_000023105.1", "taxid": 84757, "species_taxid": 84757, "relation_to_type": "type", "validated": true, "ani": 76.6126, "matched_fragments": 96, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia subflava", "strain": "strain=JCM 19765", "accession": "GCA_009362315.1", "taxid": 1622177, "species_taxid": 1622177, "relation_to_type": "type", "validated": true, "ani": 76.5371, "matched_fragments": 87, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudactinotalea terrae", "strain": "strain=KACC 16542", "accession": "GCA_009733845.1", "taxid": 1743262, "species_taxid": 1743262, "relation_to_type": "type", "validated": true, "ani": 76.5138, "matched_fragments": 110, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Georgenia subflava", "strain": "strain=CGMCC 1.12782", "accession": "GCA_009193155.1", "taxid": 1622177, "species_taxid": 1622177, "relation_to_type": "type", "validated": true, "ani": 76.3593, "matched_fragments": 89, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium herbarum", "strain": "strain=LMG19917T", "accession": "GCA_025000405.1", "taxid": 150122, "species_taxid": 150122, "relation_to_type": "suspected-type", "validated": true, "ani": 75.9784, "matched_fragments": 55, "total_fragments": 828, "ani_threshold": 95, "status": 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"Sphaerisporangium corydalis", "strain": "strain=NEAU-YHS15", "accession": "GCA_025506355.1", "taxid": 1441875, "species_taxid": 1441875, "relation_to_type": "type", "validated": true, "ani": 75.5111, "matched_fragments": 71, "total_fragments": 828, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006715765.1", "gtdb_species": "s__Rarobacter incanus", "ani": 100.0, "matched_fragments": 828, "total_fragments": 828, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Rarobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_006716265.1", "gtdb_species": "s__Rarobacter faecitabidus", "ani": 79.1221, 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