{ "type": "genome", "identifier": "GCF_006716065.1", "organism": "Salinispora arenicola", "title": "Salinispora arenicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716065.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512364", "wgs_master": "VFOL00000000.1", "refseq_category": "reference genome", "taxid": "168697", "species_taxid": "168697", "organism_name": "Salinispora arenicola", "infraspecific_name": "strain=DSM 44819", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671606v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/065/GCF_006716065.1_ASM671606v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5632046", "genome_size_ungapped": "5632046", "gc_percent": "69.500000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716065.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5035", "protein_coding_gene_count": "4795", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Salinispora arenicola" ], "sample_taxid": [ "168697" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.528 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5632046", "Number of Sequences": "1", "Longest Sequences (bp)": "5632046", "N50 (bp)": "5632046", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.5", "Number of CDSs": "5009", "Average Protein Length": "327.2", "Coding Ratio (%)": "87.3", "Number of rRNAs": "9", "Number of tRNAs": "66", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinispora arenicola", "strain": "strain=DSM 44819", "accession": "GCA_006716065.1", "taxid": 168697, "species_taxid": 168697, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1876, "total_fragments": 1877, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Salinispora tropica", "strain": "strain=CNB-440", "accession": "GCA_000016425.1", "taxid": 168695, "species_taxid": 168695, "relation_to_type": "type", "validated": true, "ani": 87.9614, "matched_fragments": 1333, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora pacifica", "strain": "strain=CNR114", "accession": "GCA_000514775.1", "taxid": 351187, "species_taxid": 351187, "relation_to_type": "suspected-type", "validated": true, "ani": 87.7271, "matched_fragments": 1356, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora cortesiana", "strain": "strain=CNY-202", "accession": "GCA_000484695.1", "taxid": 1305843, "species_taxid": 1305843, "relation_to_type": "type", "validated": true, "ani": 87.601, "matched_fragments": 1285, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora mooreana", "strain": "strain=DSM 45549", "accession": "GCA_000379065.1", "taxid": 999545, "species_taxid": 999545, "relation_to_type": "type", "validated": true, "ani": 87.5845, "matched_fragments": 1279, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora mooreana", "strain": "strain=CNT-150", "accession": "GCA_000514435.1", "taxid": 999545, "species_taxid": 999545, "relation_to_type": "type", "validated": true, "ani": 87.5314, "matched_fragments": 1254, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora fenicalii", "strain": "strain=CNT-569", "accession": "GCA_000514815.1", "taxid": 1137263, "species_taxid": 1137263, "relation_to_type": "type", "validated": true, "ani": 87.5231, "matched_fragments": 1319, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinispora vitiensis", "strain": "strain=CNT-148", 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"0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 49, "status": "conclusive" }, { "accession": "GCF_000016425.1", "gtdb_species": "s__Micromonospora tropica", "ani": 87.9794, "matched_fragments": 1334, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.43", "min_intra_species_ani": "99.27", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_000514775.1", "gtdb_species": "s__Micromonospora pacifica", "ani": 87.7435, "matched_fragments": 1355, "total_fragments": 1877, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Micromonosporaceae;g__Micromonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "96.63", "mean_intra_species_af": "0.90", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 27.0, "optimum_tmp": 22.917, "optimum_ph": 9.5, "genome_size": 5690837.092, "gc_content": 69.49, "coding_genes": 4890.0, "rRNA16S_genes": 3.0, "tRNA_genes": 52.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 1.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Salinispora", "arenicola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }