{ "type": "genome", "identifier": "GCF_006716265.1", "organism": "Rarobacter faecitabidus", "title": "Rarobacter faecitabidus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716265.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512373", "wgs_master": "VFOS00000000.1", "refseq_category": "reference genome", "taxid": "13243", "species_taxid": "13243", "organism_name": "Rarobacter faecitabidus", "infraspecific_name": "strain=DSM 4813", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671626v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/265/GCF_006716265.1_ASM671626v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2804931", "genome_size_ungapped": "2804931", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "7", "contig_count": "7", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716265.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2379", "protein_coding_gene_count": "2293", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Rarobacter faecitabidus" ], "sample_taxid": [ "13243" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.777 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.93, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2804931", "Number of Sequences": "7", "Longest Sequences (bp)": "1834324", "N50 (bp)": "1834324", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "2364", "Average Protein Length": "356.1", "Coding Ratio (%)": "90.0", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rarobacter faecitabidus", "strain": "strain=DSM 4813", "accession": "GCA_006716265.1", "taxid": 13243, "species_taxid": 13243, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 930, "total_fragments": 932, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Rarobacter incanus", "strain": "strain=DSM 10596", "accession": "GCA_006715765.1", "taxid": 153494, "species_taxid": 153494, "relation_to_type": "type", "validated": true, "ani": 78.9419, "matched_fragments": 250, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas palmilytica", "strain": "strain=EW123", "accession": "GCA_021590045.1", "taxid": 2608402, "species_taxid": 2608402, "relation_to_type": "type", "validated": true, "ani": 78.2219, "matched_fragments": 237, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia rustica", "strain": "strain=Sa4CUA1", "accession": "GCA_014836555.1", "taxid": 2762237, "species_taxid": 2762237, "relation_to_type": "type", "validated": true, "ani": 78.1423, "matched_fragments": 225, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Promicromonospora kroppenstedtii", "strain": "strain=DSM 19349", "accession": "GCA_000515355.1", "taxid": 440482, "species_taxid": 440482, "relation_to_type": "type", "validated": true, "ani": 78.1148, "matched_fragments": 190, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas fimi", "strain": "strain=NCTC7547", "accession": "GCA_900637695.1", "taxid": 1708, "species_taxid": 1708, "relation_to_type": "type", "validated": true, "ani": 78.0604, "matched_fragments": 215, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas gilvus", "strain": "strain=ATCC 13127", "accession": "GCA_000218545.1", "taxid": 11, "species_taxid": 11, "relation_to_type": "type", "validated": true, "ani": 78.0333, "matched_fragments": 214, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulosimicrobium marinum", "strain": "strain=NBRC 110994", "accession": "GCA_020551945.1", "taxid": 1638992, "species_taxid": 1638992, "relation_to_type": "type", "validated": true, "ani": 78.0197, "matched_fragments": 215, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 77.9463, "matched_fragments": 235, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas biazotea", "strain": "strain=NBRC12680", "accession": "GCA_004306155.1", "taxid": 1709, "species_taxid": 1709, "relation_to_type": "type", "validated": true, "ani": 77.9443, "matched_fragments": 207, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas telluris", "strain": "strain=CPCC 204705", "accession": "GCA_004886325.1", "taxid": 2306636, 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true, "ani": 77.7619, "matched_fragments": 217, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinotalea subterranea", "strain": "strain=HO-Ch2", "accession": "GCA_008364845.1", "taxid": 2607497, "species_taxid": 2607497, "relation_to_type": "type", "validated": true, "ani": 77.6521, "matched_fragments": 202, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas timonensis", "strain": "strain=SN7", "accession": "GCA_900046455.1", "taxid": 1689271, "species_taxid": 1689271, "relation_to_type": "type", "validated": true, "ani": 77.6415, "matched_fragments": 206, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cellulomonas denverensis", "strain": "strain=ATCC BAA-788", "accession": "GCA_012396125.1", "taxid": 264297, "species_taxid": 264297, "relation_to_type": "type", "validated": true, "ani": 77.5314, "matched_fragments": 193, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002797595.1", "gtdb_species": "s__Sediminihabitans luteus", "ani": 78.1656, "matched_fragments": 214, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Sediminihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000215105.1", "gtdb_species": "s__Isoptericola variabilis_A", "ani": 78.1423, "matched_fragments": 219, "total_fragments": 932, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Cellulomonadaceae;g__Isoptericola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", 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