{
    "type": "genome",
    "identifier": "GCF_006716565.1",
    "organism": "Nocardia bhagyanarayanae",
    "title": "Nocardia bhagyanarayanae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006716565.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11511976",
        "wgs_master": "VFPG00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1215925",
        "species_taxid": "1215925",
        "organism_name": "Nocardia bhagyanarayanae",
        "infraspecific_name": "strain=DSM 103495",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/08",
        "asm_name": "ASM671656v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_006716565.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/565/GCF_006716565.1_ASM671656v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7555939",
        "genome_size_ungapped": "7555939",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006716565.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "6716",
        "protein_coding_gene_count": "6566",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-08",
    "dateModified": "2019-07-08",
    "datePublished": "2019-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Nocardia bhagyanarayanae"
        ],
        "sample_taxid": [
            "1215925"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.043 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 2.31,
        "strain_heterogeneity": 40.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7555939",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "6116456",
        "N50 (bp)": "6116456",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "6772",
        "Average Protein Length": "328.2",
        "Coding Ratio (%)": "88.2",
        "Number of rRNAs": "9",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Nocardia bhagyanarayanae",
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                "accession": "GCA_006716565.1",
                "taxid": 1215925,
                "species_taxid": 1215925,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2517,
                "total_fragments": 2517,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
                "strain": "strain=NBRC 108937",
                "accession": "GCA_001612615.1",
                "taxid": 756689,
                "species_taxid": 756689,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 2517,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia amikacinitolerans",
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                "accession": "GCA_024172045.1",
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                "validated": true,
                "ani": 93.2619,
                "matched_fragments": 2056,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia lijiangensis",
                "strain": "strain=NBRC 108240",
                "accession": "GCA_001613045.1",
                "taxid": 299618,
                "species_taxid": 299618,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.9191,
                "matched_fragments": 1924,
                "total_fragments": 2517,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia xishanensis",
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                "accession": "GCA_001613365.1",
                "taxid": 238964,
                "species_taxid": 238964,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2201,
                "matched_fragments": 1937,
                "total_fragments": 2517,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=NBRC 15532",
                "accession": "GCA_001612925.1",
                "taxid": 37329,
                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.528,
                "matched_fragments": 1274,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=DSM 43257",
                "accession": "GCA_900156775.1",
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                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.5061,
                "matched_fragments": 1344,
                "total_fragments": 2517,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nocardia farcinica",
                "strain": "strain=NCTC11134",
                "accession": "GCA_001182745.2",
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                "species_taxid": 37329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.4903,
                "matched_fragments": 1356,
                "total_fragments": 2517,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 2.31,
            "strain_heterogeneity": 40.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006716565.1",
                "gtdb_species": "s__Nocardia bhagyanarayanae",
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                "matched_fragments": 2517,
                "total_fragments": 2517,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Nocardia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001612615.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.80",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001613045.1",
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                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_001613365.1",
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            },
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                "accession": "GCF_003315035.1",
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": 0.098,
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    "_genome_taxon": [
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        "bhagyanarayanae"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}