{ "type": "genome", "identifier": "GCF_006716575.1", "organism": "Halopolyspora algeriensis", "title": "Halopolyspora algeriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716575.1", "bioproject": "PRJNA224116", "biosample": "SAMN12024797", "wgs_master": "VFPI00000000.1", "refseq_category": "reference genome", "taxid": "1500506", "species_taxid": "1500506", "organism_name": "Halopolyspora algeriensis", "infraspecific_name": "strain=DSM 46680", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671657v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/575/GCF_006716575.1_ASM671657v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4526911", "genome_size_ungapped": "4526911", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716575.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4281", "protein_coding_gene_count": "4147", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Halopolyspora algeriensis" ], "sample_taxid": [ "1500506" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.61, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4526911", "Number of Sequences": "9", "Longest Sequences (bp)": "1720075", "N50 (bp)": "810802", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.2", "Number of CDSs": "4240", "Average Protein Length": "309.6", "Coding Ratio (%)": "87.0", "Number of rRNAs": "14", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopolyspora algeriensis", "strain": "strain=DSM 46680", "accession": "GCA_006716575.1", "taxid": 1500506, "species_taxid": 1500506, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1501, "total_fragments": 1506, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halopolyspora algeriensis", "strain": "strain=CECT 8575", "accession": "GCA_003337235.1", "taxid": 1500506, "species_taxid": 1500506, "relation_to_type": "type", "validated": true, "ani": 99.9768, "matched_fragments": 1469, "total_fragments": 1506, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000062885.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.8137, "matched_fragments": 746, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=DSM 40517", "accession": "GCA_002564065.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.7697, "matched_fragments": 751, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000171635.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.6587, "matched_fragments": 725, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora hordei", "strain": "strain=DSM 44065", "accession": "GCA_013410345.1", "taxid": 1838, "species_taxid": 1838, "relation_to_type": "type", "validated": true, "ani": 79.6348, "matched_fragments": 693, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 79.483, "matched_fragments": 648, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora gloriosae", "strain": "strain=DSM 45582", "accession": "GCA_014203325.1", "taxid": 455344, "species_taxid": 455344, "relation_to_type": "type", "validated": true, "ani": 79.399, "matched_fragments": 673, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora flava", "strain": "strain=DSM 44771", "accession": "GCA_900116135.1", "taxid": 95161, "species_taxid": 95161, "relation_to_type": "type", "validated": true, "ani": 79.3669, "matched_fragments": 666, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora halophila", "strain": "strain=DSM 43834", "accession": "GCA_000371785.1", "taxid": 1850, "species_taxid": 1850, "relation_to_type": "type", "validated": true, "ani": 79.2956, "matched_fragments": 613, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora shandongensis", "strain": "strain=CGMCC 4.3530", "accession": "GCA_900106995.1", "taxid": 418495, "species_taxid": 418495, "relation_to_type": "type", "validated": true, "ani": 79.2232, "matched_fragments": 727, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora biskrensis", "strain": "strain=CECT 8576", "accession": "GCA_013408175.1", "taxid": 1470178, "species_taxid": 1470178, "relation_to_type": "type", "validated": true, "ani": 79.1921, "matched_fragments": 586, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kutzneria buriramensis", "strain": "strain=DSM 45791", "accession": "GCA_003387475.1", "taxid": 1045776, "species_taxid": 1045776, "relation_to_type": "type", "validated": true, "ani": 77.2351, "matched_fragments": 490, "total_fragments": 1506, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 73.61, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003337235.1", "gtdb_species": "s__Halopolyspora algeriensis", "ani": 99.9768, "matched_fragments": 1469, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Halopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014137975.1", "gtdb_species": "s__Halosaccharopolyspora lacisalsi", "ani": 80.9213, "matched_fragments": 824, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Halosaccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000062885.1", "gtdb_species": "s__Saccharopolyspora_D erythraea", "ani": 79.8251, "matched_fragments": 740, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_018141105.1", "gtdb_species": "s__Saccharopolyspora_D erythraea_A", "ani": 79.7217, "matched_fragments": 736, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410345.1", "gtdb_species": "s__Saccharopolyspora hordei", "ani": 79.6501, "matched_fragments": 691, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646075.1", "gtdb_species": "s__Saccharopolyspora subtropica", "ani": 79.5106, "matched_fragments": 644, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016526145.1", "gtdb_species": "s__Saccharopolyspora_C sp016526145", "ani": 79.3927, "matched_fragments": 677, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116135.1", "gtdb_species": "s__Saccharopolyspora flava", "ani": 79.3812, "matched_fragments": 664, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000384035.1", "gtdb_species": "s__Actinopolyspora mortivallis", "ani": 79.3758, "matched_fragments": 529, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.34", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000371785.1", "gtdb_species": "s__Actinopolyspora halophila", "ani": 79.2971, "matched_fragments": 608, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008630535.1", "gtdb_species": "s__Saccharopolyspora hirsuta", "ani": 79.2769, "matched_fragments": 723, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900106995.1", "gtdb_species": "s__Saccharopolyspora shandongensis", "ani": 79.2581, "matched_fragments": 722, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Saccharopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006716775.1", "gtdb_species": "s__Actinopolyspora sp006716775", "ani": 79.2154, "matched_fragments": 639, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408175.1", "gtdb_species": "s__Actinopolyspora biskrensis", "ani": 79.1983, "matched_fragments": 586, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014645795.1", "gtdb_species": "s__Longimycelium tulufanense", "ani": 77.8058, "matched_fragments": 383, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Longimycelium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008386585.1", "gtdb_species": "s__AN110305 sp008386585", "ani": 77.574, "matched_fragments": 439, "total_fragments": 1506, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__AN110305", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Halopolyspora", "algeriensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }