{ "type": "genome", "identifier": "GCF_006716585.1", "organism": "Flavobacterium branchiophilum", "title": "Flavobacterium branchiophilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716585.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444419", "wgs_master": "VFPJ00000000.1", "refseq_category": "na", "taxid": "55197", "species_taxid": "55197", "organism_name": "Flavobacterium branchiophilum", "infraspecific_name": "strain=DSM 24789", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671658v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/585/GCF_006716585.1_ASM671658v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3789855", "genome_size_ungapped": "3789855", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716585.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3304", "protein_coding_gene_count": "3223", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium branchiophilum" ], "sample_taxid": [ "55197" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.033 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3789855", "Number of Sequences": "1", "Longest Sequences (bp)": "3789855", "N50 (bp)": "3789855", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.8", "Number of CDSs": "3259", "Average Protein Length": "332.9", "Coding Ratio (%)": "85.9", "Number of rRNAs": "9", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1262, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=NBRC 15030", "accession": "GCA_007990815.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 99.8647, "matched_fragments": 1099, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=ATCC 35035", "accession": "GCA_002217205.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 99.8521, "matched_fragments": 1066, "total_fragments": 1263, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium crassostreae", "strain": "strain=LPB0076", "accession": "GCA_001831475.1", "taxid": 1763534, "species_taxid": 1763534, "relation_to_type": "type", "validated": true, "ani": 78.3851, "matched_fragments": 146, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cellulosilyticum", "strain": "strain=AR-3-4", "accession": "GCA_004349355.1", "taxid": 2541731, "species_taxid": 2541731, "relation_to_type": "type", "validated": true, "ani": 77.559, "matched_fragments": 181, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium franklandianum", "strain": "strain=LB3P56", "accession": "GCA_007097365.1", "taxid": 2594430, "species_taxid": 2594430, "relation_to_type": "type", "validated": true, "ani": 77.4382, "matched_fragments": 211, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 77.3995, "matched_fragments": 199, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.3757, "matched_fragments": 175, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.3697, "matched_fragments": 136, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium daejeonense", "strain": "strain=DSM 17708", "accession": "GCA_000425425.1", "taxid": 350893, "species_taxid": 350893, "relation_to_type": "type", "validated": true, "ani": 77.347, "matched_fragments": 160, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.3163, "matched_fragments": 134, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.3042, "matched_fragments": 163, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 77.2292, "matched_fragments": 190, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 77.2287, "matched_fragments": 185, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 77.1997, "matched_fragments": 199, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ichthyis", "strain": "strain=NST-5", "accession": "GCA_009915155.1", "taxid": 2698827, "species_taxid": 2698827, "relation_to_type": "type", "validated": true, "ani": 77.0599, "matched_fragments": 147, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium sediminilitoris", "strain": "strain=YSM-43", "accession": "GCA_023008245.1", "taxid": 2024526, "species_taxid": 2024526, "relation_to_type": "type", "validated": true, "ani": 77.0297, "matched_fragments": 140, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium columnare", "strain": "strain=ATCC 23463", "accession": "GCA_002530675.1", "taxid": 996, "species_taxid": 996, "relation_to_type": "type", "validated": true, "ani": 76.4595, "matched_fragments": 114, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium columnare", "strain": "strain=NBRC 100251", "accession": "GCA_007990835.1", "taxid": 996, "species_taxid": 996, "relation_to_type": "type", "validated": true, "ani": 76.4388, "matched_fragments": 111, "total_fragments": 1263, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002217205.1", "gtdb_species": "s__Flavobacterium 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