{ "type": "genome", "identifier": "GCF_006716645.1", "organism": "Arcticibacter tournemirensis", "title": "Arcticibacter tournemirensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716645.1", "bioproject": "PRJNA224116", "biosample": "SAMN05444971", "wgs_master": "VFPL00000000.1", "refseq_category": "reference genome", "taxid": "699437", "species_taxid": "699437", "organism_name": "Arcticibacter tournemirensis", "infraspecific_name": "strain=DSM 23085", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671664v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/645/GCF_006716645.1_ASM671664v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5655817", "genome_size_ungapped": "5655817", "gc_percent": "43.500000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716645.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4736", "protein_coding_gene_count": "4646", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Arcticibacter tournemirensis" ], "sample_taxid": [ "699437" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.608 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5655817", "Number of Sequences": "2", "Longest Sequences (bp)": "5185936", "N50 (bp)": "5185936", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.3", "Number of CDSs": "4640", "Average Protein Length": "361.0", "Coding Ratio (%)": "88.9", "Number of rRNAs": "9", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arcticibacter tournemirensis", "strain": "strain=DSM 23085", "accession": "GCA_006716645.1", "taxid": 699437, "species_taxid": 699437, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1883, "total_fragments": 1884, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arcticibacter tournemirensis", "strain": "strain=TF5-37.2-LB10", "accession": "GCA_008690275.1", "taxid": 699437, "species_taxid": 699437, "relation_to_type": "type", "validated": true, "ani": 99.9524, "matched_fragments": 1777, "total_fragments": 1884, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pararcticibacter amylolyticus", "strain": "strain=FJ4-8", "accession": "GCA_003130405.1", "taxid": 2173175, "species_taxid": 2173175, "relation_to_type": "type", "validated": true, "ani": 78.6935, "matched_fragments": 382, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 78.3764, "matched_fragments": 53, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcticibacter pallidicorallinus", "strain": "strain=CGMCC 1.9313", "accession": "GCA_003002875.1", "taxid": 1259464, "species_taxid": 1259464, "relation_to_type": "type", "validated": true, "ani": 77.7024, "matched_fragments": 111, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter mongoliensis", "strain": "strain=KCTC 52859", "accession": "GCA_024436395.1", "taxid": 2100740, "species_taxid": 2100740, "relation_to_type": "type", "validated": true, "ani": 77.5728, "matched_fragments": 92, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter xinjiangensis", "strain": "strain=CCTCC AB 208092", "accession": "GCA_024436435.1", "taxid": 539206, "species_taxid": 539206, "relation_to_type": "type", "validated": true, "ani": 76.8699, "matched_fragments": 121, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter petrophilus", "strain": "strain=LMG 29686", "accession": "GCA_009674725.1", "taxid": 1908241, "species_taxid": 1908241, "relation_to_type": "type", "validated": true, "ani": 76.7502, "matched_fragments": 50, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 76.6862, "matched_fragments": 55, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter agri", "strain": "strain=R11", "accession": "GCA_009928685.1", "taxid": 2695265, "species_taxid": 2695265, "relation_to_type": "type", "validated": true, "ani": 76.6192, "matched_fragments": 58, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Daejeonella lutea", "strain": "strain=DSM 22385", "accession": "GCA_900168015.1", "taxid": 572036, "species_taxid": 572036, "relation_to_type": "type", "validated": true, "ani": 76.5463, "matched_fragments": 66, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter kyonggii", "strain": "strain=K-4-11-1", "accession": "GCA_004310665.1", "taxid": 1926871, "species_taxid": 1926871, "relation_to_type": "type", "validated": true, "ani": 76.4792, "matched_fragments": 55, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nutrimenti", "strain": "strain=DSM 27372", "accession": "GCA_003208655.1", "taxid": 1241337, "species_taxid": 1241337, "relation_to_type": "type", "validated": true, "ani": 76.4479, "matched_fragments": 52, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter boryungensis", "strain": "strain=KCTC 23157", "accession": "GCA_015221995.1", "taxid": 768480, "species_taxid": 768480, "relation_to_type": "type", "validated": true, "ani": 76.333, "matched_fragments": 54, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=PP-F2FG21", "accession": "GCA_004378255.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.2733, "matched_fragments": 51, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=DSM 100995", "accession": "GCA_014196695.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.2275, "matched_fragments": 50, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter phyllosphaerae", "strain": "strain=CCM 8625", "accession": "GCA_014635525.1", "taxid": 1812349, "species_taxid": 1812349, "relation_to_type": "type", "validated": true, "ani": 76.1562, "matched_fragments": 52, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter rubeus", "strain": "strain=CGMCC 1.15913", "accession": "GCA_014643835.1", "taxid": 2027860, "species_taxid": 2027860, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1002, "matched_fragments": 64, "total_fragments": 1884, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006716645.1", "gtdb_species": "s__Pararcticibacter tournemirensis", "ani": 100.0, "matched_fragments": 1884, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pararcticibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003130405.1", "gtdb_species": "s__Pararcticibacter amylolyticus", "ani": 78.7181, "matched_fragments": 381, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pararcticibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015654985.1", "gtdb_species": "s__Pararcticibacter sp015654985", "ani": 78.032, "matched_fragments": 358, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pararcticibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003002875.1", "gtdb_species": "s__Arcticibacter pallidicorallinus", "ani": 77.7024, "matched_fragments": 111, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Arcticibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355855.1", "gtdb_species": "s__SYSU-D00535 sp017355855", "ani": 77.4108, "matched_fragments": 105, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__SYSU-D00535", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002454425.1", "gtdb_species": "s__Pararcticibacter sp002454425", "ani": 77.3598, "matched_fragments": 110, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pararcticibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355835.1", "gtdb_species": "s__SYSU-D00535 sp017355835", "ani": 77.0958, "matched_fragments": 103, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__SYSU-D00535", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017355785.1", "gtdb_species": "s__SYSU-D00535 sp017355785", "ani": 77.0296, "matched_fragments": 108, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__SYSU-D00535", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142915.1", "gtdb_species": "s__Mucilaginibacter sp900142915", "ani": 76.9199, "matched_fragments": 73, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008274585.1", "gtdb_species": "s__BS3 sp008274585", "ani": 76.8925, "matched_fragments": 84, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__BS3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168015.1", "gtdb_species": "s__Daejeonella lutea", "ani": 76.5463, "matched_fragments": 66, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Daejeonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004310665.1", "gtdb_species": "s__Pedobacter kyonggii", "ani": 76.4792, "matched_fragments": 55, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014200575.1", "gtdb_species": "s__Mucilaginibacter sp014200575", "ani": 76.4217, "matched_fragments": 57, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900100945.1", "gtdb_species": "s__Mucilaginibacter gossypii", "ani": 76.4161, "matched_fragments": 69, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.19", "min_intra_species_ani": "95.83", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_900103125.1", "gtdb_species": "s__Mucilaginibacter sp900103125", "ani": 76.4005, "matched_fragments": 61, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003208075.1", "gtdb_species": "s__Mucilaginibacter sp003208075", "ani": 76.3868, "matched_fragments": 58, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000633455.1", "gtdb_species": "s__Pedobacter jeongneungensis", "ani": 76.3084, "matched_fragments": 54, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004378255.1", "gtdb_species": "s__Mucilaginibacter phyllosphaerae", "ani": 76.2665, "matched_fragments": 50, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014643835.1", "gtdb_species": "s__Mucilaginibacter rubeus", "ani": 76.092, "matched_fragments": 63, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001705515.1", "gtdb_species": "s__Mucilaginibacter sp001705515", "ani": 76.06, "matched_fragments": 58, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002413785.1", "gtdb_species": "s__Mucilaginibacter sp002413785", "ani": 75.9374, "matched_fragments": 55, "total_fragments": 1884, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.87", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": 4116409.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Arcticibacter", "tournemirensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }