{ "type": "genome", "identifier": "GCF_006716695.1", "organism": "Klugiella xanthotipulae", "title": "Klugiella xanthotipulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716695.1", "bioproject": "PRJNA224116", "biosample": "SAMN11512783", "wgs_master": "VFPN00000000.1", "refseq_category": "reference genome", "taxid": "244735", "species_taxid": "244735", "organism_name": "Klugiella xanthotipulae", "infraspecific_name": "strain=DSM 18031", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671669v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/695/GCF_006716695.1_ASM671669v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2984076", "genome_size_ungapped": "2984076", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716695.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2696", "protein_coding_gene_count": "2608", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Klugiella xanthotipulae" ], "sample_taxid": [ "244735" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Michigan" ], "sample_host_location_id": [], "data_size": "0.837 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2984076", "Number of Sequences": "4", "Longest Sequences (bp)": "1351095", "N50 (bp)": "758822", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.7", "Number of CDSs": "2687", "Average Protein Length": "331.7", "Coding Ratio (%)": "89.6", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Klugiella xanthotipulae", "strain": "strain=DSM 18031", "accession": "GCA_006716695.1", "taxid": 244735, "species_taxid": 244735, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 987, "total_fragments": 993, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lysinibacter cavernae", "strain": "strain=DSM 27960", "accession": "GCA_011758565.1", "taxid": 1640652, "species_taxid": 1640652, "relation_to_type": "type", "validated": true, "ani": 78.1878, "matched_fragments": 198, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium roopkundense", "strain": "strain=DSM 21065", "accession": "GCA_014200405.1", "taxid": 1001240, "species_taxid": 1001240, "relation_to_type": "type", "validated": true, "ani": 77.6942, "matched_fragments": 87, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter komagatae", "strain": "strain=DSM 8803", "accession": "GCA_006716085.1", "taxid": 55969, "species_taxid": 55969, "relation_to_type": "type", "validated": true, "ani": 77.5194, "matched_fragments": 87, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain=KCTC 9931", "accession": "GCA_014652955.1", "taxid": 205941, "species_taxid": 205941, "relation_to_type": "type", "validated": true, "ani": 77.386, "matched_fragments": 73, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia aquatica", "strain": "strain=ATCC 14665", "accession": "GCA_000469485.1", "taxid": 144185, "species_taxid": 144185, "relation_to_type": "type", "validated": true, "ani": 77.3814, "matched_fragments": 91, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium soli", "strain": "strain=GCJ02", "accession": "GCA_003611035.1", "taxid": 2220095, "species_taxid": 2220095, "relation_to_type": "type", "validated": true, "ani": 77.3791, "matched_fragments": 118, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia naganoensis", "strain": "strain=DSM 15166", "accession": "GCA_013410615.1", "taxid": 150025, 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"total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arthrobacter sedimenti", "strain": "strain=MIC A30", "accession": "GCA_011750795.2", "taxid": 2694931, "species_taxid": 2694931, "relation_to_type": "type", "validated": true, "ani": 77.0193, "matched_fragments": 55, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinibacterium amurskyense", "strain": "strain=DSM 16400", "accession": "GCA_002797685.1", "taxid": 205941, "species_taxid": 205941, "relation_to_type": "type", "validated": true, "ani": 76.9043, "matched_fragments": 71, "total_fragments": 993, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cnuibacter physcomitrellae", "strain": "strain=CGMCC 1.15041", "accession": "GCA_014640535.1", "taxid": 1619308, "species_taxid": 1619308, "relation_to_type": "type", "validated": true, "ani": 76.9024, "matched_fragments": 93, "total_fragments": 993, "ani_threshold": 95, 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