{ "type": "genome", "identifier": "GCF_006716865.1", "organism": "Roseinatronobacter monicus", "title": "Roseinatronobacter monicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716865.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443025", "wgs_master": "VFPT00000000.1", "refseq_category": "reference genome", "taxid": "393481", "species_taxid": "393481", "organism_name": "Roseinatronobacter monicus", "infraspecific_name": "strain=DSM 18423", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671686v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/865/GCF_006716865.1_ASM671686v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4725029", "genome_size_ungapped": "4725029", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716865.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4562", "protein_coding_gene_count": "4383", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseinatronobacter monicus" ], "sample_taxid": [ "393481" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.314 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4725029", "Number of Sequences": "6", "Longest Sequences (bp)": "3772823", "N50 (bp)": "3772823", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.2", "Number of CDSs": "4627", "Average Protein Length": "299.7", "Coding Ratio (%)": "88.1", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseinatronobacter monicus", "strain": "strain=DSM 18423", "accession": "GCA_006716865.1", "taxid": 393481, "species_taxid": 393481, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1567, "total_fragments": 1572, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Roseinatronobacter thiooxidans", "strain": "strain=ALG1", "accession": "GCA_001870675.1", "taxid": 121821, "species_taxid": 121821, "relation_to_type": "type", "validated": true, "ani": 83.547, "matched_fragments": 801, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseinatronobacter thiooxidans", "strain": "strain=DSM 13087", "accession": "GCA_003254005.1", "taxid": 121821, "species_taxid": 121821, "relation_to_type": "type", "validated": true, "ani": 83.5103, "matched_fragments": 819, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobaca barguzinensis", "strain": "strain=alga05", "accession": "GCA_001870665.2", "taxid": 441209, "species_taxid": 441209, "relation_to_type": "suspected-type", "validated": true, "ani": 81.9208, "matched_fragments": 817, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodobaca bogoriensis", "strain": "strain=DSM 18756", "accession": "GCA_004366635.1", "taxid": 119542, "species_taxid": 119542, "relation_to_type": "suspected-type", "validated": true, "ani": 81.8486, "matched_fragments": 793, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmobacter aquarius", "strain": "strain=HYN0069", "accession": "GCA_003060865.1", "taxid": 2169400, "species_taxid": 2169400, "relation_to_type": "type", "validated": true, "ani": 77.5017, "matched_fragments": 208, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius pacificus", "strain": "strain=CGMCC 1.7083", "accession": "GCA_014645335.1", "taxid": 337701, "species_taxid": 337701, "relation_to_type": "type", "validated": true, "ani": 77.1268, "matched_fragments": 206, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter ovatus", "strain": "strain=JA234", "accession": "GCA_900207575.1", "taxid": 439529, "species_taxid": 439529, "relation_to_type": "type", "validated": true, "ani": 77.0061, "matched_fragments": 207, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudogemmobacter bohemicus", "strain": "strain=Cd-10", "accession": "GCA_003290025.1", "taxid": 2250708, "species_taxid": 2250708, "relation_to_type": "type", "validated": true, "ani": 76.9556, "matched_fragments": 202, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceaniglobus trochenteri", "strain": "strain=G4", "accession": "GCA_020529025.1", "taxid": 2763260, "species_taxid": 2763260, "relation_to_type": "type", "validated": true, "ani": 76.8869, "matched_fragments": 167, "total_fragments": 1572, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": 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