{ "type": "genome", "identifier": "GCF_006716905.1", "organism": "Acidovorax temperans", "title": "Acidovorax temperans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006716905.1", "bioproject": "PRJNA224116", "biosample": "SAMN05443405", "wgs_master": "VFPV00000000.1", "refseq_category": "na", "taxid": "80878", "species_taxid": "80878", "organism_name": "Acidovorax temperans", "infraspecific_name": "strain=DSM 7270", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/08", "asm_name": "ASM671690v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_006716905.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/716/905/GCF_006716905.1_ASM671690v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4651394", "genome_size_ungapped": "4651394", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006716905.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "4395", "protein_coding_gene_count": "4157", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-08", "dateModified": "2019-07-08", "datePublished": "2019-07-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Acidovorax temperans" ], "sample_taxid": [ "80878" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.285 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4651394", "Number of Sequences": "6", "Longest Sequences (bp)": "1718268", "N50 (bp)": "1430447", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.2", "Number of CDSs": "4321", "Average Protein Length": "314.9", "Coding Ratio (%)": "87.8", "Number of rRNAs": "12", "Number of tRNAs": "57", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acidovorax temperans", "strain": "strain=DSM 7270", "accession": "GCA_006716905.1", "taxid": 80878, "species_taxid": 80878, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1544, "total_fragments": 1547, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acidovorax kalamii", "strain": "strain=KNDSW-TSA6", "accession": "GCA_002245625.1", "taxid": 2004485, "species_taxid": 2004485, "relation_to_type": "type", "validated": true, "ani": 84.3111, "matched_fragments": 938, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 84.2679, "matched_fragments": 958, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax facilis", "strain": "strain=DSM 649", "accession": "GCA_023913775.1", "taxid": 12917, "species_taxid": 12917, "relation_to_type": "type", "validated": true, "ani": 83.8409, "matched_fragments": 963, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax soli", 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78229, "species_taxid": 78229, "relation_to_type": "type", "validated": true, "ani": 80.7322, "matched_fragments": 727, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax avenae subsp. avenae", "strain": "strain=ATCC 19860", "accession": "GCA_000176855.2", "taxid": 80870, "species_taxid": 80867, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6697, "matched_fragments": 718, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax citrulli", "strain": "strain=DSM 17060", "accession": "GCA_900100305.1", "taxid": 80869, "species_taxid": 80869, "relation_to_type": "type", "validated": true, "ani": 80.4535, "matched_fragments": 720, "total_fragments": 1547, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, 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