{
    "type": "genome",
    "identifier": "GCF_006718285.1",
    "organism": "Acidithiobacillus thiooxidans ATCC 19377",
    "title": "Acidithiobacillus thiooxidans ATCC 19377",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Universite de Montreal",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006718285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN11492794",
        "wgs_master": "SZUV00000000.1",
        "refseq_category": "na",
        "taxid": "637390",
        "species_taxid": "930",
        "organism_name": "Acidithiobacillus thiooxidans ATCC 19377",
        "infraspecific_name": "strain=ATCC 19377",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/08",
        "asm_name": "ASM671828v1",
        "asm_submitter": "Universite de Montreal",
        "gbrs_paired_asm": "GCA_006718285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/718/285/GCF_006718285.1_ASM671828v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3453155",
        "genome_size_ungapped": "3450708",
        "gc_percent": "52.500000",
        "replicon_count": "0",
        "scaffold_count": "59",
        "contig_count": "59",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006718285.1-RS_2024_05_14",
        "annotation_date": "2024-05-14",
        "total_gene_count": "3584",
        "protein_coding_gene_count": "3425",
        "non_coding_gene_count": "75",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-08",
    "dateModified": "2019-07-08",
    "datePublished": "2019-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Acidithiobacillus thiooxidans ATCC 19377"
        ],
        "sample_taxid": [
            "637390"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "na"
        ],
        "sample_host_location_id": [],
        "data_size": "0.981 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3453155",
        "Number of Sequences": "59",
        "Longest Sequences (bp)": "2391157",
        "N50 (bp)": "2391157",
        "Gap Ratio (%)": "0.070863",
        "GCcontent (%)": "52.6",
        "Number of CDSs": "3484",
        "Average Protein Length": "290.5",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "6",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Acidithiobacillus thiooxidans",
                "strain": "strain=ATCC 19377",
                "accession": "GCA_006718285.1",
                "taxid": 930,
                "species_taxid": 930,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1128,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acidithiobacillus thiooxidans",
                "strain": "strain=ATCC 19377",
                "accession": "GCA_000227215.2",
                "taxid": 930,
                "species_taxid": 930,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 97.1355,
                "matched_fragments": 755,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acidithiobacillus thiooxidans",
                "strain": "strain=ATCC 19377",
                "accession": "GCA_009662475.1",
                "taxid": 930,
                "species_taxid": 930,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.9454,
                "matched_fragments": 868,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Acidithiobacillus ferridurans",
                "strain": "strain=JCM 18981",
                "accession": "GCA_003966655.1",
                "taxid": 1232575,
                "species_taxid": 1232575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3322,
                "matched_fragments": 232,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferrooxidans",
                "strain": "strain=ATCC 23270",
                "accession": "GCA_000021485.1",
                "taxid": 920,
                "species_taxid": 920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.8263,
                "matched_fragments": 246,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Acidithiobacillus ferrianus",
                "strain": "strain=MG",
                "accession": "GCA_010378095.1",
                "taxid": 2678518,
                "species_taxid": 2678518,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6994,
                "matched_fragments": 205,
                "total_fragments": 1132,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_009662475.1",
                "gtdb_species": "s__Acidithiobacillus thiooxidans",
                "ani": 96.9567,
                "matched_fragments": 867,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.93",
                "min_intra_species_ani": "97.09",
                "mean_intra_species_af": "0.77",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 22,
                "status": "conclusive"
            },
            {
                "accession": "GCF_015100155.1",
                "gtdb_species": "s__Acidithiobacillus sp015100155",
                "ani": 94.5153,
                "matched_fragments": 788,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018853815.1",
                "gtdb_species": "s__Acidithiobacillus sp018853815",
                "ani": 92.8502,
                "matched_fragments": 759,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018853445.1",
                "gtdb_species": "s__Acidithiobacillus sp018853445",
                "ani": 91.6666,
                "matched_fragments": 691,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002847505.1",
                "gtdb_species": "s__Acidithiobacillus sp002847505",
                "ani": 81.2229,
                "matched_fragments": 533,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018853465.1",
                "gtdb_species": "s__Acidithiobacillus sp018853465",
                "ani": 80.9306,
                "matched_fragments": 516,
                "total_fragments": 1132,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Acidithiobacillales;f__Acidithiobacillaceae;g__Acidithiobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.74",
                "min_intra_species_ani": "99.74",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.0,
        "doubling_h": 1.867,
        "growth_tmp": 27.533,
        "optimum_tmp": 28.0,
        "optimum_ph": 2.0,
        "genome_size": 3751820.667,
        "gc_content": 52.95,
        "coding_genes": 2959.333,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 55.133,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Acidithiobacillus",
        "thiooxidans",
        "ATCC",
        "19377"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}