{ "type": "genome", "identifier": "GCF_006740045.1", "organism": "Comamonas terrigena NBRC 13299", "title": "Comamonas terrigena NBRC 13299", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006740045.1", "bioproject": "PRJNA224116", "biosample": "SAMD00018640", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1219032", "species_taxid": "32013", "organism_name": "Comamonas terrigena NBRC 13299", "infraspecific_name": "strain=NBRC 13299", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/14", "asm_name": "ASM674004v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_006740045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/740/045/GCF_006740045.1_ASM674004v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4673011", "genome_size_ungapped": "4673011", "gc_percent": "65.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006740045.1-RS_2024_05_14", "annotation_date": "2024-05-14", "total_gene_count": "4245", "protein_coding_gene_count": "4082", "non_coding_gene_count": "107", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-14", "dateModified": "2019-06-14", "datePublished": "2019-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Comamonas terrigena NBRC 13299" ], "sample_taxid": [ "1219032" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "1.276 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4673011", "Number of Sequences": "1", "Longest Sequences (bp)": "4673011", "N50 (bp)": "4673011", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.0", "Number of CDSs": "4158", "Average Protein Length": "322.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "21", "Number of tRNAs": "90", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Comamonas terrigena", "strain": "strain=NCTC1937", "accession": "GCA_900461435.1", "taxid": 32013, "species_taxid": 32013, "relation_to_type": 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95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001418295.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 81.7718, "matched_fragments": 825, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001517325.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 81.7569, "matched_fragments": 826, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 81.6934, "matched_fragments": 824, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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