{ "type": "genome", "identifier": "GCF_006757745.1", "organism": "Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788", "title": "Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006757745.1", "bioproject": "PRJNA224116", "biosample": "SAMD00041796", "wgs_master": "na", "refseq_category": "na", "taxid": "981334", "species_taxid": "40216", "organism_name": "Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788", "infraspecific_name": "strain=NBRC 102413", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/14", "asm_name": "ASM675774v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_006757745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/757/745/GCF_006757745.1_ASM675774v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3433938", "genome_size_ungapped": "3433938", "gc_percent": "41.500000", "replicon_count": "9", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006757745.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3275", "protein_coding_gene_count": "3128", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-14", "dateModified": "2019-06-14", "datePublished": "2019-06-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788" ], "sample_taxid": [ "981334" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.973 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3433938", "Number of Sequences": "9", "Longest Sequences (bp)": "3038795", "N50 (bp)": "3038795", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "3216", "Average Protein Length": "303.4", "Coding Ratio (%)": "85.2", "Number of rRNAs": "18", "Number of tRNAs": "71", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter radioresistens", "strain": "strain=NBRC 102413", "accession": "GCA_006757745.1", "taxid": 40216, "species_taxid": 40216, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1139, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter radioresistens", "strain": "strain=CIP 103788", "accession": "GCA_000368905.1", "taxid": 40216, "species_taxid": 40216, "relation_to_type": "type", "validated": true, "ani": 99.9751, "matched_fragments": 1045, "total_fragments": 1139, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.9514, "matched_fragments": 395, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 80.5741, "matched_fragments": 407, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter lwoffii", "strain": "strain=FDAARGOS 1393", "accession": "GCA_019048305.1", "taxid": 28090, "species_taxid": 28090, "relation_to_type": "type", "validated": true, "ani": 80.3683, "matched_fragments": 387, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter septicus", "strain": "strain=FDAARGOS_1401", "accession": "GCA_019355975.1", "taxid": 465797, "species_taxid": 465797, "relation_to_type": "type", "validated": true, "ani": 80.368, "matched_fragments": 322, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.2302, "matched_fragments": 391, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.707, "matched_fragments": 380, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter seohaensis", "strain": "strain=DSM 16313", "accession": "GCA_018403785.1", "taxid": 281376, "species_taxid": 281376, "relation_to_type": "type", "validated": true, "ani": 79.6641, "matched_fragments": 308, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.662, "matched_fragments": 337, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.6562, "matched_fragments": 334, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=CIP 107472", "accession": "GCA_000368785.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 79.6463, "matched_fragments": 326, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pseudolwoffii", "strain": "strain=ANC 5044", "accession": "GCA_002803605.1", "taxid": 2053287, "species_taxid": 2053287, "relation_to_type": "type", "validated": true, "ani": 79.4765, "matched_fragments": 355, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter towneri", "strain": "strain=DSM 14962", "accession": "GCA_000688495.1", "taxid": 202956, "species_taxid": 202956, "relation_to_type": "type", "validated": true, "ani": 79.4443, "matched_fragments": 309, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tandoii", "strain": "strain=CIP 107469", "accession": "GCA_000400735.1", "taxid": 202954, "species_taxid": 202954, "relation_to_type": "type", "validated": true, "ani": 79.3517, "matched_fragments": 362, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pullicarnis", "strain": "strain=S23", "accession": "GCA_006352475.1", "taxid": 2576829, "species_taxid": 2576829, "relation_to_type": "type", "validated": true, "ani": 79.3337, "matched_fragments": 263, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 79.0997, "matched_fragments": 282, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter chengduensis", "strain": "strain=WCHAc060005", "accession": "GCA_003664645.1", "taxid": 2420890, "species_taxid": 2420890, "relation_to_type": "type", "validated": true, "ani": 79.0033, "matched_fragments": 306, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=CIP 110357", "accession": "GCA_000488275.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.9979, "matched_fragments": 263, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 78.9516, "matched_fragments": 340, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": "GCA_000271425.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 78.9307, "matched_fragments": 276, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 78.8756, "matched_fragments": 284, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=CIP 107468", "accession": "GCA_000368865.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 78.8599, "matched_fragments": 299, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=CIP 110063", "accession": "GCA_000368585.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 78.7035, "matched_fragments": 277, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=DSM 14964", "accession": "GCA_000373725.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 78.6593, "matched_fragments": 306, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter brisouii", "strain": "strain=DSM 18516", "accession": "GCA_000931655.1", "taxid": 396323, "species_taxid": 396323, "relation_to_type": "type", "validated": true, "ani": 78.6197, "matched_fragments": 253, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter tjernbergiae", "strain": "strain=CIP 107465", "accession": "GCA_000488175.1", "taxid": 202955, "species_taxid": 202955, "relation_to_type": "type", "validated": true, "ani": 78.6135, "matched_fragments": 257, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter halotolerans", "strain": "strain=JCM 31009", "accession": "GCA_004208515.1", "taxid": 1752076, "species_taxid": 1752076, "relation_to_type": "type", "validated": true, "ani": 78.6114, "matched_fragments": 245, "total_fragments": 1139, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_006757745.1", "gtdb_species": "s__Acinetobacter radioresistens", "ani": 100.0, "matched_fragments": 1137, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.57", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 74, "status": "conclusive" }, { "accession": "GCF_000488255.1", "gtdb_species": "s__Acinetobacter indicus", "ani": 80.8833, "matched_fragments": 393, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "96.50", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.82", "num_clustered_genomes": 131, "status": "-" }, { "accession": "GCF_015218165.1", "gtdb_species": "s__Acinetobacter 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80.2722, "matched_fragments": 293, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002165255.2", "gtdb_species": "s__Acinetobacter sp002165255", "ani": 80.1043, "matched_fragments": 278, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000773685.1", "gtdb_species": "s__Acinetobacter sp000773685", "ani": 79.9145, 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"gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.62", "min_intra_species_ani": "97.19", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_000400735.1", "gtdb_species": "s__Acinetobacter tandoii", "ani": 79.3874, "matched_fragments": 362, "total_fragments": 1139, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "97.12", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_002165375.2", "gtdb_species": "s__Acinetobacter chinensis", "ani": 79.3816, "matched_fragments": 372, "total_fragments": 1139, "gtdb_taxonomy": 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