{ "type": "genome", "identifier": "GCF_006912135.1", "organism": "Cryptosporangium phraense", "title": "Cryptosporangium phraense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Center for Genetic Engineering and Biotechnology (BIOTEC)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_006912135.1", "bioproject": "PRJNA224116", "biosample": "SAMN12206368", "wgs_master": "VIRS00000000.1", "refseq_category": "reference genome", "taxid": "2593070", "species_taxid": "2593070", "organism_name": "Cryptosporangium phraense", "infraspecific_name": "strain=A-T 5661", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/11", "asm_name": "ASM691213v1", "asm_submitter": "National Center for Genetic Engineering and Biotechnology (BIOTEC)", "gbrs_paired_asm": "GCA_006912135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/912/135/GCF_006912135.1_ASM691213v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8463372", "genome_size_ungapped": "8463372", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_006912135.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "7986", "protein_coding_gene_count": "7863", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-11", "dateModified": "2019-07-11", "datePublished": "2019-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Cryptosporangium phraense" ], "sample_taxid": [ "2593070" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "2.261 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8463372", "Number of Sequences": "87", "Longest Sequences (bp)": "497015", "N50 (bp)": "211630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.6", "Number of CDSs": "8074", "Average Protein Length": "314.4", "Coding Ratio (%)": "90.0", "Number of rRNAs": "1", "Number of tRNAs": "66", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cryptosporangium phraense", "strain": "strain=A-T 5661", "accession": "GCA_006912135.1", "taxid": 2593070, "species_taxid": 2593070, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Motilibacter deserti", "strain": "strain=E257", "accession": "GCA_011250635.1", "taxid": 2714956, "species_taxid": 2714956, "relation_to_type": "type", "validated": true, "ani": 76.1949, "matched_fragments": 528, "total_fragments": 2780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora fastidiosa", "strain": "strain=JCM 3276", "accession": "GCA_014648415.1", "taxid": 1816, "species_taxid": 1816, "relation_to_type": "type", "validated": true, "ani": 76.181, "matched_fragments": 694, "total_fragments": 2780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerisporangium krabiense", "strain": "strain=DSM 45790", "accession": "GCA_014200435.1", "taxid": 763782, "species_taxid": 763782, "relation_to_type": "type", "validated": true, "ani": 76.0511, "matched_fragments": 670, "total_fragments": 2780, "ani_threshold": 95, "status": "below_threshold" }, { 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