{
    "type": "genome",
    "identifier": "GCF_006965545.2",
    "organism": "Paenalkalicoccus suaedae",
    "title": "Paenalkalicoccus suaedae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Inner Mongolia University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006965545.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12167196",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2592382",
        "species_taxid": "2592382",
        "organism_name": "Paenalkalicoccus suaedae",
        "infraspecific_name": "strain=M4U3P1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/16",
        "asm_name": "ASM696554v2",
        "asm_submitter": "Inner Mongolia University",
        "gbrs_paired_asm": "GCA_006965545.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/965/545/GCF_006965545.2_ASM696554v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4040495",
        "genome_size_ungapped": "4040495",
        "gc_percent": "43.000000",
        "replicon_count": "3",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006965545.2-RS_2024_05_26",
        "annotation_date": "2024-05-26",
        "total_gene_count": "4004",
        "protein_coding_gene_count": "3888",
        "non_coding_gene_count": "98",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-16",
    "dateModified": "2020-06-16",
    "datePublished": "2020-06-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenalkalicoccus suaedae"
        ],
        "sample_taxid": [
            "2592382"
        ],
        "sample_host_organism": [
            "Suaeda salsa"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Inner Mongolia"
        ],
        "sample_host_location_id": [],
        "data_size": "1.147 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4040495",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "3969553",
        "N50 (bp)": "3969553",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.1",
        "Number of CDSs": "4025",
        "Average Protein Length": "279.6",
        "Coding Ratio (%)": "83.6",
        "Number of rRNAs": "22",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paenalkalicoccus suaedae",
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                "species_taxid": 2592382,
                "relation_to_type": "type",
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                "matched_fragments": 1341,
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            },
            {
                "organism_name": "Evansella clarkii",
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                "accession": "GCA_002019695.1",
                "taxid": 79879,
                "species_taxid": 79879,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sutcliffiella halmapala",
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                "accession": "GCA_002019665.1",
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                "species_taxid": 79882,
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                "validated": true,
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                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteribacter populi",
                "strain": "strain=FJAT-45347",
                "accession": "GCA_002352765.2",
                "taxid": 2011011,
                "species_taxid": 2011011,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2757,
                "matched_fragments": 65,
                "total_fragments": 1345,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bacillus shivajii",
                "strain": "strain=JCM 32183",
                "accession": "GCA_020519665.1",
                "taxid": 1983719,
                "species_taxid": 1983719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7802,
                "matched_fragments": 80,
                "total_fragments": 1345,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alteribacter aurantiacus",
                "strain": "strain=DSM 18675",
                "accession": "GCA_000429705.1",
                "taxid": 254410,
                "species_taxid": 254410,
                "relation_to_type": "type",
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                "ani": 78.1058,
                "matched_fragments": 64,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalicoccus halolimnae",
                "strain": "strain=BZ-SZ-XJ29",
                "accession": "GCA_008014775.1",
                "taxid": 1667239,
                "species_taxid": 1667239,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.439,
                "matched_fragments": 54,
                "total_fragments": 1345,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 4.17,
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        "gtdb_result": [
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                "accession": "GCF_006965545.2",
                "gtdb_species": "s__Alkalicoccus sp006965545",
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                "matched_fragments": 1344,
                "total_fragments": 1345,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Alkalicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Evansella",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002019605.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Bacillaceae_F;g__Bacillus_BH",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.46",
                "min_intra_species_ani": "97.46",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
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            },
            {
                "accession": "GCF_000429705.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_H;f__Salisediminibacteriaceae;g__Alteribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008014775.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
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        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Paenalkalicoccus",
        "suaedae"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}