{
    "type": "genome",
    "identifier": "GCF_006980705.1",
    "organism": "Tepidiphilus olei",
    "title": "Tepidiphilus olei",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "China Agricultural University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_006980705.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN10716029",
        "wgs_master": "SBHO00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2502184",
        "species_taxid": "2502184",
        "organism_name": "Tepidiphilus olei",
        "infraspecific_name": "strain=J18",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/12",
        "asm_name": "ASM698070v1",
        "asm_submitter": "China Agricultural University",
        "gbrs_paired_asm": "GCA_006980705.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/006/980/705/GCF_006980705.1_ASM698070v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2317094",
        "genome_size_ungapped": "2317094",
        "gc_percent": "64.500000",
        "replicon_count": "0",
        "scaffold_count": "25",
        "contig_count": "25",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_006980705.1-RS_2024_10_11",
        "annotation_date": "2024-10-11",
        "total_gene_count": "2253",
        "protein_coding_gene_count": "2163",
        "non_coding_gene_count": "57",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-12",
    "dateModified": "2019-07-12",
    "datePublished": "2019-07-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Tepidiphilus olei"
        ],
        "sample_taxid": [
            "2502184"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Panjin"
        ],
        "sample_host_location_id": [],
        "data_size": "0.643 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2317094",
        "Number of Sequences": "25",
        "Longest Sequences (bp)": "652451",
        "N50 (bp)": "194644",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.4",
        "Number of CDSs": "2169",
        "Average Protein Length": "329.5",
        "Coding Ratio (%)": "92.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "50",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Tepidiphilus olei",
                "strain": "strain=J18",
                "accession": "GCA_006980705.1",
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                "species_taxid": 2502184,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 756,
                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Tepidiphilus baoligensis",
                "strain": "strain=B18-69",
                "accession": "GCA_012911495.1",
                "taxid": 2698687,
                "species_taxid": 2698687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9079,
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                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Tepidiphilus margaritifer",
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                "accession": "GCA_000425565.1",
                "taxid": 203471,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 587,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidiphilus thermophilus",
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                "accession": "GCA_001418245.1",
                "taxid": 876478,
                "species_taxid": 876478,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.2385,
                "matched_fragments": 591,
                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tepidiphilus thermophilus",
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                "species_taxid": 876478,
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                "ani": 89.2385,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia thailandensis",
                "strain": "strain=E264; ATCC 700388",
                "accession": "GCA_000012365.1",
                "taxid": 57975,
                "species_taxid": 57975,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 121,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia thailandensis",
                "strain": "strain=ATCC 700388",
                "accession": "GCA_000152285.1",
                "taxid": 57975,
                "species_taxid": 57975,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9568,
                "matched_fragments": 110,
                "total_fragments": 761,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_012911495.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Tepidiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.01",
                "min_intra_species_ani": "96.91",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000425565.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Tepidiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_006503695.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Tepidiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.86",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCA_016235745.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__Tepidiphilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_003034845.1",
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_003963015.1",
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            },
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            {
                "accession": "GCA_016720685.1",
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.456,
        "cell_length": 0.301,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}