{ "type": "genome", "identifier": "GCF_007004065.1", "organism": "Palleronia caenipelagi", "title": "Palleronia caenipelagi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007004065.1", "bioproject": "PRJNA224116", "biosample": "SAMN11658264", "wgs_master": "VFSV00000000.1", "refseq_category": "reference genome", "taxid": "2489174", "species_taxid": "2489174", "organism_name": "Palleronia caenipelagi", "infraspecific_name": "strain=JBTF-M29", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/15", "asm_name": "ASM700406v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_007004065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/004/065/GCF_007004065.1_ASM700406v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4020978", "genome_size_ungapped": "4020978", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "192", "contig_count": "192", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007004065.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "4173", "protein_coding_gene_count": "3810", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-15", "dateModified": "2019-07-15", "datePublished": "2019-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Palleronia caenipelagi" ], "sample_taxid": [ "2489174" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jebu Island" ], "sample_host_location_id": [], "data_size": "1.134 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4020978", "Number of Sequences": "192", "Longest Sequences (bp)": "209009", "N50 (bp)": "73364", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.7", "Number of CDSs": "3905", "Average Protein Length": "294.6", "Coding Ratio (%)": "85.8", "Number of rRNAs": "4", "Number of tRNAs": "49", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenimaribius caenipelagi", "strain": "strain=JBTF-M29", "accession": "GCA_007004065.1", "taxid": 2489174, "species_taxid": 2489174, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1244, "total_fragments": 1250, 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35805, "species_taxid": 35805, "relation_to_type": "type", "validated": true, "ani": 77.3704, "matched_fragments": 227, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum robiginosum", "strain": "strain=DSM 12329", "accession": "GCA_003944755.1", "taxid": 68292, "species_taxid": 68292, "relation_to_type": "type", "validated": true, "ani": 77.3476, "matched_fragments": 247, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.3062, "matched_fragments": 225, "total_fragments": 1250, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter azotoformans", "strain": "strain=KA25", "accession": "GCA_003050905.1", "taxid": 43057, "species_taxid": 43057, "relation_to_type": "type", 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