{ "type": "genome", "identifier": "GCF_007004095.1", "organism": "Erythrobacter insulae", "title": "Erythrobacter insulae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sungkyunkwan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007004095.1", "bioproject": "PRJNA224116", "biosample": "SAMN11878087", "wgs_master": "VHJK00000000.1", "refseq_category": "reference genome", "taxid": "2584124", "species_taxid": "2584124", "organism_name": "Erythrobacter insulae", "infraspecific_name": "strain=JBTF-M21", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/15", "asm_name": "ASM700409v1", "asm_submitter": "Sungkyunkwan University", "gbrs_paired_asm": "GCA_007004095.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/004/095/GCF_007004095.1_ASM700409v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2986343", "genome_size_ungapped": "2986343", "gc_percent": "57.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007004095.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "2828", "protein_coding_gene_count": "2779", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-15", "dateModified": "2019-07-15", "datePublished": "2019-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Erythrobacter insulae" ], "sample_taxid": [ "2584124" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jebu island" ], "sample_host_location_id": [], "data_size": "0.842 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2986343", "Number of Sequences": "3", "Longest Sequences (bp)": "2685587", "N50 (bp)": "2685587", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.0", "Number of CDSs": "2810", "Average Protein Length": "324.1", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Erythrobacter insulae", "strain": "strain=JBTF-M21", "accession": "GCA_007004095.1", "taxid": 2584124, "species_taxid": 2584124, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 994, "total_fragments": 994, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Erythrobacter rubeus", "strain": "strain=KMU-140", "accession": "GCA_014705715.1", "taxid": 2760803, "species_taxid": 2760803, "relation_to_type": "type", "validated": true, "ani": 78.2889, "matched_fragments": 374, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=DSM 8510", "accession": "GCA_014195675.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.5299, "matched_fragments": 243, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiapuensis", "strain": "strain=1NDW9", "accession": "GCA_019711395.1", "taxid": 2867236, "species_taxid": 2867236, "relation_to_type": "type", "validated": true, "ani": 77.52, "matched_fragments": 146, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter ramosus", "strain": "strain=JCM 10282", "accession": "GCA_009828055.1", "taxid": 35811, "species_taxid": 35811, "relation_to_type": "type", "validated": true, "ani": 77.4807, "matched_fragments": 247, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontixanthobacter aquaemixtae", "strain": "strain=KCTC 52763", "accession": "GCA_009827395.1", "taxid": 1958940, "species_taxid": 1958940, "relation_to_type": "type", "validated": true, "ani": 77.4671, "matched_fragments": 208, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania psychrotolerans", "strain": "strain=1XM2-8", "accession": "GCA_019711355.1", "taxid": 2867238, "species_taxid": 2867238, "relation_to_type": "type", "validated": true, "ani": 77.4662, "matched_fragments": 162, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=DSM 11032", "accession": "GCA_900143235.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.453, "matched_fragments": 303, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter sanguineus", "strain": "strain=JCM 20691", "accession": "GCA_002155655.1", "taxid": 198312, "species_taxid": 198312, "relation_to_type": "type", "validated": true, "ani": 77.4441, "matched_fragments": 296, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altererythrobacter ishigakiensis", "strain": "strain=ATCC BAA-2084", "accession": "GCA_007830695.1", "taxid": 476157, "species_taxid": 476157, "relation_to_type": "type", "validated": true, "ani": 77.3796, "matched_fragments": 177, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania xiamenensis", "strain": "strain=1XM1-15A", "accession": "GCA_019711495.1", "taxid": 2867237, "species_taxid": 2867237, "relation_to_type": "type", "validated": true, "ani": 77.3715, "matched_fragments": 169, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania huizhouensis", "strain": "strain=YG19", "accession": "GCA_019711635.1", "taxid": 2867245, "species_taxid": 2867245, "relation_to_type": "type", "validated": true, "ani": 77.3615, "matched_fragments": 160, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altererythrobacter ishigakiensis", "strain": "strain=NBRC 107699", "accession": "GCA_001663155.1", "taxid": 476157, "species_taxid": 476157, "relation_to_type": "type", "validated": true, "ani": 77.3243, "matched_fragments": 175, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Altericroceibacterium endophyticum", "strain": "strain=LMG 29518", "accession": "GCA_009827595.1", "taxid": 1808508, "species_taxid": 1808508, "relation_to_type": "type", "validated": true, "ani": 77.269, "matched_fragments": 125, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania pacifica", "strain": "strain=NZ-96", "accession": "GCA_019857205.1", "taxid": 2860199, "species_taxid": 2860199, "relation_to_type": "type", "validated": true, "ani": 77.256, "matched_fragments": 144, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter dokdonensis", "strain": "strain=DSW-74", "accession": "GCA_001677335.1", "taxid": 328225, "species_taxid": 328225, "relation_to_type": "type", "validated": true, "ani": 77.0114, "matched_fragments": 236, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania flava", "strain": "strain=DSM 16421", "accession": "GCA_011762005.1", "taxid": 192812, "species_taxid": 192812, "relation_to_type": "type", "validated": true, "ani": 76.9934, "matched_fragments": 168, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tsuneonella flava", "strain": "strain=MS1-4", "accession": "GCA_002870965.1", "taxid": 2055955, "species_taxid": 2055955, "relation_to_type": "type", "validated": true, "ani": 76.9797, "matched_fragments": 148, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter marinus", "strain": "strain=H32", "accession": "GCA_009827515.1", "taxid": 538382, "species_taxid": 538382, "relation_to_type": "type", "validated": true, "ani": 76.92, "matched_fragments": 153, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Qipengyuania aestuarii", "strain": "strain=GH1", "accession": "GCA_019711535.1", "taxid": 2867241, "species_taxid": 2867241, "relation_to_type": "type", "validated": true, "ani": 76.9052, "matched_fragments": 142, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagerythrobacter rhizovicinus", "strain": "strain=AY-3R", "accession": "GCA_004135625.1", "taxid": 2268576, "species_taxid": 2268576, "relation_to_type": "type", "validated": true, "ani": 76.7641, "matched_fragments": 124, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erythrobacter cryptus", "strain": "strain=DSM 12079", "accession": "GCA_000422985.1", "taxid": 196588, "species_taxid": 196588, "relation_to_type": "type", "validated": true, "ani": 76.6779, "matched_fragments": 188, "total_fragments": 994, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007004095.1", "gtdb_species": "s__Erythrobacter insulae", "ani": 100.0, "matched_fragments": 994, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_019204045.1", "gtdb_species": "s__Erythrobacter sp019204045", "ani": 79.7515, "matched_fragments": 452, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014705715.1", "gtdb_species": "s__Erythrobacter sp014705715", "ani": 78.2792, "matched_fragments": 375, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019204025.1", "gtdb_species": "s__Erythrobacter sp019204025", "ani": 78.1999, "matched_fragments": 359, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000714765.1", "gtdb_species": "s__Erythrobacter sp000714765", "ani": 78.0901, "matched_fragments": 367, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900149685.1", "gtdb_species": "s__Erythrobacter sp900149685", "ani": 77.9971, "matched_fragments": 287, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000152865.1", "gtdb_species": "s__Erythrobacter sp000152865", "ani": 77.9507, "matched_fragments": 295, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003264115.1", "gtdb_species": "s__Erythrobacter sp003264115", "ani": 77.8892, "matched_fragments": 309, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009363635.1", "gtdb_species": "s__Erythrobacter sp009363635", "ani": 77.7201, "matched_fragments": 353, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900177715.1", "gtdb_species": "s__Erythrobacter xiamenensis", "ani": 77.5674, "matched_fragments": 210, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744895.1", "gtdb_species": "s__Erythrobacter sp000744895", "ani": 77.5283, "matched_fragments": 286, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001542875.1", "gtdb_species": "s__Erythrobacter sp001542875", "ani": 77.5231, "matched_fragments": 252, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900143235.1", "gtdb_species": "s__Erythrobacter sanguineus", "ani": 77.4528, "matched_fragments": 303, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002952215.1", "gtdb_species": "s__Erythrobacter sp002952215", "ani": 77.3338, "matched_fragments": 234, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002855495.1", "gtdb_species": "s__Erythrobacter sp002855495", "ani": 77.3045, "matched_fragments": 246, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009905735.1", "gtdb_species": "s__Erythrobacter sp009905735", "ani": 77.2268, "matched_fragments": 255, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001724215.1", "gtdb_species": "s__Erythrobacter sp001724215", "ani": 77.0875, "matched_fragments": 237, "total_fragments": 994, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Erythrobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.343, "cell_length": 0.193, "doubling_h": null, "growth_tmp": 28.375, "optimum_tmp": 28.388, "optimum_ph": 7.464, "genome_size": 3027217.49, "gc_content": 62.412, "coding_genes": 2905.766, "rRNA16S_genes": 1.25, "tRNA_genes": 45.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.125, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Erythrobacter", "insulae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }