{ "type": "genome", "identifier": "GCF_007004625.1", "organism": "Planococcus salinarum", "title": "Planococcus salinarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beijing Institute of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007004625.1", "bioproject": "PRJNA224116", "biosample": "SAMN09104547", "wgs_master": "VIFV00000000.1", "refseq_category": "na", "taxid": "622695", "species_taxid": "622695", "organism_name": "Planococcus salinarum", "infraspecific_name": "strain=KCTC 13584", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/12", "asm_name": "ASM700462v1", "asm_submitter": "Beijing Institute of Technology", "gbrs_paired_asm": "GCA_007004625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/004/625/GCF_007004625.1_ASM700462v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3287567", "genome_size_ungapped": "3287547", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "66", "contig_count": "68", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007004625.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3283", "protein_coding_gene_count": "3176", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-12", "dateModified": "2019-07-12", "datePublished": "2019-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Planococcus salinarum" ], "sample_taxid": [ "622695" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.936 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3287567", "Number of Sequences": "66", "Longest Sequences (bp)": "364748", "N50 (bp)": "103007", "Gap Ratio (%)": "0.000608", "GCcontent (%)": "46.8", "Number of CDSs": "3228", "Average Protein Length": "286.2", "Coding Ratio (%)": "84.3", "Number of rRNAs": "8", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Planococcus salinarum", "strain": "strain=KCTC 13584", "accession": "GCA_007004625.1", "taxid": 622695, "species_taxid": 622695, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1057, "total_fragments": 1060, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus salinarum", "strain": "strain=ISL-16", "accession": "GCA_003428865.1", "taxid": 622695, "species_taxid": 622695, "relation_to_type": "type", "validated": true, "ani": 99.9894, "matched_fragments": 1032, "total_fragments": 1060, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus salinarum", "strain": "strain=DSM 23820", "accession": "GCA_001856085.1", "taxid": 622695, "species_taxid": 622695, "relation_to_type": "type", "validated": true, "ani": 98.8376, "matched_fragments": 267, "total_fragments": 1060, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Planococcus koreensis", "strain": "strain=10704", "accession": "GCA_004761975.1", "taxid": 112331, "species_taxid": 112331, "relation_to_type": "type", "validated": true, "ani": 78.8164, "matched_fragments": 344, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus koreensis", "strain": "strain=DSM 15895", "accession": "GCA_014202615.1", "taxid": 112331, "species_taxid": 112331, "relation_to_type": "type", "validated": true, "ani": 78.8143, "matched_fragments": 359, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus antarcticus", "strain": "strain=DSM 14505", "accession": "GCA_000264415.1", "taxid": 161360, "species_taxid": 161360, "relation_to_type": "type", "validated": true, "ani": 78.7935, "matched_fragments": 276, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus ruber", "strain": "strain=CGMCC 1.19134", "accession": "GCA_022819085.1", "taxid": 2027871, "species_taxid": 2027871, "relation_to_type": "type", "validated": true, "ani": 78.6579, "matched_fragments": 305, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus glaciei", "strain": "strain=CGMCC 1.6846", "accession": "GCA_900099655.1", "taxid": 459472, "species_taxid": 459472, "relation_to_type": "type", "validated": true, "ani": 78.6229, "matched_fragments": 338, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus soli", "strain": "strain=c23", "accession": "GCA_016881065.1", "taxid": 2666072, "species_taxid": 2666072, "relation_to_type": "type", "validated": true, "ani": 78.5895, "matched_fragments": 331, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus wigleyi", "strain": "strain=Sa1BUA13", "accession": "GCA_014836985.1", "taxid": 2762216, "species_taxid": 2762216, "relation_to_type": "type", "validated": true, "ani": 78.5538, "matched_fragments": 354, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planococcus maitriensis", "strain": "strain=S1", "accession": "GCA_003289925.1", "taxid": 221799, "species_taxid": 221799, "relation_to_type": "type", "validated": true, "ani": 78.0479, "matched_fragments": 283, "total_fragments": 1060, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007004625.1", "gtdb_species": "s__Planococcus salinarum", "ani": 100.0, "matched_fragments": 1057, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003668635.1", "gtdb_species": "s__Planococcus sp003668635", "ani": 82.7235, "matched_fragments": 726, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003289955.1", "gtdb_species": "s__Planococcus halotolerans", "ani": 82.628, "matched_fragments": 734, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.14", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003428875.1", "gtdb_species": "s__Planococcus okeanokoites", "ani": 82.4316, "matched_fragments": 680, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "97.25", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.87", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_017873465.1", "gtdb_species": "s__Planococcus mcmeekinii", "ani": 82.1476, "matched_fragments": 670, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000775575.1", "gtdb_species": "s__Planococcus sp000775575", "ani": 81.2909, "matched_fragments": 511, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016820495.1", "gtdb_species": "s__Planococcus sp016820495", "ani": 80.8626, "matched_fragments": 550, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018613655.1", "gtdb_species": "s__Planococcus sp018613655", "ani": 78.4992, "matched_fragments": 291, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003289925.1", "gtdb_species": "s__Planococcus maitriensis", "ani": 78.0632, "matched_fragments": 281, "total_fragments": 1060, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_A;f__Planococcaceae;g__Planococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.267, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 30.0, "optimum_ph": 7.25, "genome_size": 3461599.112, "gc_content": 43.845, "coding_genes": 3296.062, "rRNA16S_genes": 9.375, "tRNA_genes": 72.125, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.666, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.333, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 1.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Planococcus", "salinarum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }