{ "type": "genome", "identifier": "GCF_007004655.1", "organism": "Exilibacterium tricleocarpae", "title": "Exilibacterium tricleocarpae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangxi University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007004655.1", "bioproject": "PRJNA224116", "biosample": "SAMN12109840", "wgs_master": "VHSG00000000.1", "refseq_category": "reference genome", "taxid": "2591008", "species_taxid": "2591008", "organism_name": "Exilibacterium tricleocarpae", "infraspecific_name": "strain=R142", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/15", "asm_name": "ASM700465v1", "asm_submitter": "Guangxi University", "gbrs_paired_asm": "GCA_007004655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/004/655/GCF_007004655.1_ASM700465v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7176565", "genome_size_ungapped": "7176455", "gc_percent": "56.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "84", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007004655.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "5712", "protein_coding_gene_count": "5599", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-15", "dateModified": "2019-07-15", "datePublished": "2019-07-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Exilibacterium tricleocarpae" ], "sample_taxid": [ "2591008" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Nanning" ], "sample_host_location_id": [], "data_size": "2.035 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7176565", "Number of Sequences": "73", "Longest Sequences (bp)": "696616", "N50 (bp)": "331714", "Gap Ratio (%)": "0.001533", "GCcontent (%)": "56.4", "Number of CDSs": "5759", "Average Protein Length": "345.0", "Coding Ratio (%)": "83.0", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exilibacterium tricleocarpae", "strain": "strain=R142", "accession": "GCA_007004655.1", "taxid": 2591008, "species_taxid": 2591008, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2356, "total_fragments": 2359, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Microbulbifer flavimaris", "strain": "strain=WRN-8", "accession": "GCA_001641755.2", "taxid": 1781068, "species_taxid": 1781068, "relation_to_type": "type", "validated": true, "ani": 76.8508, "matched_fragments": 114, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer rhizosphaerae", "strain": "strain=CECT 8799", "accession": "GCA_014191725.1", "taxid": 1562603, "species_taxid": 1562603, "relation_to_type": "type", "validated": true, "ani": 76.7433, "matched_fragments": 193, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus chinensis", "strain": "strain=DSM 19667", "accession": "GCA_000377745.1", "taxid": 396005, "species_taxid": 396005, "relation_to_type": "type", "validated": true, "ani": 76.6002, "matched_fragments": 70, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer hydrolyticus", "strain": "strain=IRE-31", "accession": "GCA_009931115.1", "taxid": 48074, "species_taxid": 48074, "relation_to_type": "type", "validated": true, "ani": 76.5358, "matched_fragments": 103, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomaricurvus alcaniphilus", "strain": "strain=MEBiC06469", "accession": "GCA_011440395.1", "taxid": 1166482, "species_taxid": 1166482, "relation_to_type": "type", "validated": true, "ani": 76.484, "matched_fragments": 199, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer hydrolyticus", "strain": "strain=DSM 11525", "accession": "GCA_014202835.1", "taxid": 48074, "species_taxid": 48074, "relation_to_type": "type", "validated": true, "ani": 76.4818, "matched_fragments": 103, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium koreense", "strain": "strain=DSM 16974", "accession": "GCA_003762925.1", "taxid": 306545, "species_taxid": 306545, "relation_to_type": "type", "validated": true, "ani": 76.4531, "matched_fragments": 124, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbulbifer thermotolerans", "strain": "strain=DSM 19189", "accession": "GCA_900112305.1", "taxid": 252514, "species_taxid": 252514, "relation_to_type": "type", "validated": true, "ani": 76.4381, "matched_fragments": 108, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seongchinamella unica", "strain": "strain=GH4-78", "accession": "GCA_004354085.1", "taxid": 2547392, "species_taxid": 2547392, "relation_to_type": "type", "validated": true, "ani": 76.3586, "matched_fragments": 79, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium agarilyticum", "strain": "strain=DSM 16975", "accession": "GCA_000423345.1", "taxid": 306546, "species_taxid": 306546, "relation_to_type": "type", "validated": true, "ani": 76.3407, "matched_fragments": 120, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simiduia agarivorans", "strain": "strain=SA1 = DSM 21679", "accession": "GCA_000305785.2", "taxid": 447471, "species_taxid": 447471, "relation_to_type": "type", "validated": true, "ani": 76.3341, "matched_fragments": 119, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariicella albida", "strain": "strain=HHU G3-2", "accession": "GCA_018863235.1", "taxid": 2842452, "species_taxid": 2842452, "relation_to_type": "type", "validated": true, "ani": 76.2754, "matched_fragments": 85, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_014207695.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.2337, "matched_fragments": 57, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinimicrobium alkaliphilum", "strain": "strain=SW121", "accession": "GCA_003259155.1", "taxid": 2202654, "species_taxid": 2202654, "relation_to_type": "type", "validated": true, "ani": 76.1734, "matched_fragments": 125, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_011683895.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.1687, "matched_fragments": 57, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Simiduia agarivorans", "strain": "strain=DSM 21679", "accession": "GCA_000420285.1", "taxid": 447471, "species_taxid": 447471, "relation_to_type": "type", "validated": true, "ani": 76.1054, "matched_fragments": 119, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 76.045, "matched_fragments": 134, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=LMG 25246", "accession": "GCA_011602085.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 76.017, "matched_fragments": 56, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 75.9821, "matched_fragments": 104, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 75.9723, "matched_fragments": 124, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas benzenivorans", "strain": "strain=DSM 8628", "accession": "GCA_900100495.1", "taxid": 556533, "species_taxid": 556533, "relation_to_type": "type", "validated": true, "ani": 75.9157, "matched_fragments": 130, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 75.8226, "matched_fragments": 84, "total_fragments": 2359, 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"below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 75.706, "matched_fragments": 130, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 75.6929, "matched_fragments": 81, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kushneria aurantia", "strain": "strain=DSM 21353", "accession": "GCA_000382245.1", "taxid": 504092, "species_taxid": 504092, "relation_to_type": "type", "validated": true, "ani": 75.68, "matched_fragments": 71, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium lutimaris", "strain": "strain=DSM 22012", "accession": "GCA_900108065.1", "taxid": 568106, "species_taxid": 568106, "relation_to_type": "type", "validated": true, "ani": 75.5722, "matched_fragments": 64, "total_fragments": 2359, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007004655.1", "gtdb_species": "s__Exilibacterium tricleocarpae", "ani": 100.0, "matched_fragments": 2356, "total_fragments": 2359, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Exilibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001641755.2", "gtdb_species": "s__Microbulbifer flavimaris", "ani": 76.8701, "matched_fragments": 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