{ "tc_result": [ { "organism_name": "Lactobacillus mulieris", "strain": "strain=c10Ua161M", "accession": "GCA_007095465.1", "taxid": 2508708, "species_taxid": 2508708, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 532, "total_fragments": 534, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lactobacillus jensenii", "strain": "strain=ATCC 25258", "accession": "GCA_018094625.1", "taxid": 109790, "species_taxid": 109790, "relation_to_type": "type", "validated": true, "ani": 88.4676, "matched_fragments": 433, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus jensenii", "strain": "strain=DSM 20557", "accession": "GCA_001436455.1", "taxid": 109790, "species_taxid": 109790, "relation_to_type": "type", "validated": true, "ani": 88.4109, "matched_fragments": 423, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus psittaci", "strain": "strain=DSM 15354", "accession": "GCA_000425905.1", "taxid": 116089, "species_taxid": 116089, "relation_to_type": "type", "validated": true, "ani": 83.4828, "matched_fragments": 322, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus psittaci", "strain": "strain=DSM 15354", "accession": "GCA_001435695.1", "taxid": 116089, "species_taxid": 116089, "relation_to_type": "type", "validated": true, "ani": 83.2771, "matched_fragments": 323, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus amylolyticus", "strain": "strain=DSM 11664", "accession": "GCA_004354545.1", "taxid": 83683, "species_taxid": 83683, "relation_to_type": "type", "validated": true, "ani": 78.5262, "matched_fragments": 112, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus amylolyticus", "strain": "strain=DSM 11664", "accession": "GCA_001435665.1", "taxid": 83683, "species_taxid": 83683, "relation_to_type": "type", "validated": true, "ani": 78.4904, "matched_fragments": 110, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus laiwuensis", "strain": "strain=F551-2", "accession": "GCA_019972835.1", "taxid": 2841034, "species_taxid": 2841034, "relation_to_type": "type", "validated": true, "ani": 77.7891, "matched_fragments": 61, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactobacillus apis", "strain": "strain=LMG 26964", "accession": "GCA_002837055.1", "taxid": 303541, "species_taxid": 303541, "relation_to_type": "type", "validated": true, "ani": 77.3116, "matched_fragments": 90, "total_fragments": 534, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007095465.1", "gtdb_species": "s__Lactobacillus mulieris", "ani": 100.0, "matched_fragments": 532, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.54", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 18, "status": "conclusive" }, { "accession": "GCF_001436455.1", "gtdb_species": "s__Lactobacillus jensenii", "ani": 88.3886, "matched_fragments": 424, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.86", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 31, "status": "-" }, { "accession": "GCF_000425905.1", "gtdb_species": "s__Lactobacillus psittaci", "ani": 83.5256, "matched_fragments": 320, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.95", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001434975.1", "gtdb_species": "s__Lactobacillus gallinarum", "ani": 78.7876, "matched_fragments": 120, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.30", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_001434335.1", "gtdb_species": "s__Lactobacillus kalixensis", "ani": 78.6995, "matched_fragments": 116, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001591845.1", "gtdb_species": "s__Lactobacillus acidophilus", "ani": 78.6922, "matched_fragments": 136, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.12", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.94", "num_clustered_genomes": 59, "status": "-" }, { "accession": "GCF_003423665.1", "gtdb_species": "s__Lactobacillus rodentium", "ani": 78.5856, "matched_fragments": 104, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007570935.1", "gtdb_species": "s__Lactobacillus sp007570935", "ani": 78.5605, "matched_fragments": 129, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000178475.1", "gtdb_species": "s__Lactobacillus amylolyticus", "ani": 78.5577, "matched_fragments": 109, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.45", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.87", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000160855.1", "gtdb_species": "s__Lactobacillus helveticus", "ani": 78.5103, "matched_fragments": 129, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "96.37", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.75", "num_clustered_genomes": 146, "status": "-" }, { "accession": "GCA_014803895.1", "gtdb_species": "s__Lactobacillus sp014803895", "ani": 78.4781, "matched_fragments": 107, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004009905.1", "gtdb_species": "s__Lactobacillus xujianguonis", "ani": 78.2932, "matched_fragments": 128, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.82", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000296835.1", "gtdb_species": "s__Lactobacillus hominis", "ani": 78.1707, "matched_fragments": 115, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.73", "min_intra_species_ani": "99.20", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.89", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_002916935.1", "gtdb_species": "s__Lactobacillus panisapium", "ani": 78.0234, "matched_fragments": 77, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000970855.1", "gtdb_species": "s__Lactobacillus helsingborgensis", "ani": 77.6515, "matched_fragments": 68, "total_fragments": 534, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.65", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" } ] }