{ "type": "genome", "identifier": "GCF_007096385.1", "organism": "Aliidiomarina halalkaliphila", "title": "Aliidiomarina halalkaliphila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbiology, Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_007096385.1", "bioproject": "PRJNA224116", "biosample": "SAMN12228963", "wgs_master": "VJWL00000000.1", "refseq_category": "reference genome", "taxid": "2593535", "species_taxid": "2593535", "organism_name": "Aliidiomarina halalkaliphila", "infraspecific_name": "strain=IM 1326", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/17", "asm_name": "ASM709638v1", "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_007096385.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/096/385/GCF_007096385.1_ASM709638v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2571805", "genome_size_ungapped": "2571105", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_007096385.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2370", "protein_coding_gene_count": "2299", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-17", "dateModified": "2019-07-17", "datePublished": "2019-07-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliidiomarina halalkaliphila" ], "sample_taxid": [ "2593535" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Inner Mongolia" ], "sample_host_location_id": [], "data_size": "0.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2571805", "Number of Sequences": "12", "Longest Sequences (bp)": "1425733", "N50 (bp)": "1425733", "Gap Ratio (%)": "0.027218", "GCcontent (%)": "49.7", "Number of CDSs": "2333", "Average Protein Length": "332.6", "Coding Ratio (%)": "90.5", "Number of rRNAs": "2", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliidiomarina halalkaliphila", "strain": "strain=IM 1326", "accession": "GCA_007096385.1", "taxid": 2593535, "species_taxid": 2593535, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 851, "total_fragments": 852, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aliidiomarina indica", "strain": "strain=SW123", "accession": "GCA_015354615.1", "taxid": 2749147, "species_taxid": 2749147, "relation_to_type": "type", "validated": true, "ani": 81.4778, "matched_fragments": 514, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina sanyensis", "strain": "strain=GYP-17", "accession": "GCA_003987175.1", "taxid": 1249555, "species_taxid": 1249555, "relation_to_type": "type", "validated": true, "ani": 78.9105, "matched_fragments": 225, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina haloalkalitolerans", "strain": "strain=AK5", "accession": "GCA_003987315.1", "taxid": 859059, "species_taxid": 859059, "relation_to_type": "type", "validated": true, "ani": 78.3127, "matched_fragments": 161, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina shirensis", "strain": "strain=AIS", "accession": "GCA_003987345.1", "taxid": 1048642, "species_taxid": 1048642, "relation_to_type": "type", "validated": true, "ani": 78.2053, "matched_fragments": 149, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina iranensis", "strain": "strain=GBPy7", "accession": "GCA_003987135.1", "taxid": 1434071, "species_taxid": 1434071, "relation_to_type": "type", "validated": true, "ani": 77.9786, "matched_fragments": 139, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina soli", "strain": "strain=Y4G10-17", "accession": "GCA_003986975.1", "taxid": 1928574, "species_taxid": 1928574, "relation_to_type": "type", "validated": true, "ani": 77.5529, "matched_fragments": 73, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliidiomarina maris", "strain": "strain=CF12-14", "accession": "GCA_003987335.1", "taxid": 531312, "species_taxid": 531312, "relation_to_type": "type", "validated": true, "ani": 77.5378, "matched_fragments": 94, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina tyrosinivorans", "strain": "strain=CC-PW-9", "accession": "GCA_003987475.1", "taxid": 1445662, "species_taxid": 1445662, "relation_to_type": "type", "validated": true, "ani": 77.2813, "matched_fragments": 53, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina sediminum", "strain": "strain=DSM 21906", "accession": "GCA_000423165.1", "taxid": 431675, "species_taxid": 431675, "relation_to_type": "type", "validated": true, "ani": 77.0876, "matched_fragments": 66, "total_fragments": 852, "ani_threshold": 95, "status": "below_threshold" } ], 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987175.1", "gtdb_species": "s__Aliidiomarina sanyensis", "ani": 78.9289, "matched_fragments": 224, "total_fragments": 852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000218785.1", "gtdb_species": "s__Aliidiomarina sp000218785", "ani": 78.5035, "matched_fragments": 133, "total_fragments": 852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987315.1", "gtdb_species": "s__Aliidiomarina haloalkalitolerans", "ani": 78.3064, "matched_fragments": 162, "total_fragments": 852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003987135.1", "gtdb_species": "s__Aliidiomarina iranensis", "ani": 77.9836, "matched_fragments": 138, "total_fragments": 852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Aliidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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"num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000299895.1", "gtdb_species": "s__Idiomarina xiamenensis", "ani": 77.0912, "matched_fragments": 52, "total_fragments": 852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423165.1", "gtdb_species": "s__Pseudidiomarina sediminum", "ani": 77.0468, "matched_fragments": 65, "total_fragments": 852, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.412, "cell_length": 0.039, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 33.75, "optimum_ph": 8.75, "genome_size": 3002452.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Aliidiomarina", "halalkaliphila" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }