{
    "type": "genome",
    "identifier": "GCF_007097155.1",
    "organism": "Glacieibacterium frigidum",
    "title": "Glacieibacterium frigidum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institute of Microbiology, Chinese Academy of Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_007097155.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN12217343",
        "wgs_master": "VJWA00000000.1",
        "refseq_category": "reference genome",
        "taxid": "2593303",
        "species_taxid": "2593303",
        "organism_name": "Glacieibacterium frigidum",
        "infraspecific_name": "strain=LB1R16",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/17",
        "asm_name": "ASM709715v1",
        "asm_submitter": "Institute of Microbiology, Chinese Academy of Sciences",
        "gbrs_paired_asm": "GCA_007097155.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/097/155/GCF_007097155.1_ASM709715v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3428851",
        "genome_size_ungapped": "3428851",
        "gc_percent": "69.000000",
        "replicon_count": "0",
        "scaffold_count": "3",
        "contig_count": "3",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_007097155.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "3369",
        "protein_coding_gene_count": "3284",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-17",
    "dateModified": "2019-07-17",
    "datePublished": "2019-07-17",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Glacieibacterium frigidum"
        ],
        "sample_taxid": [
            "2593303"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.923 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3428851",
        "Number of Sequences": "3",
        "Longest Sequences (bp)": "1948859",
        "N50 (bp)": "1948859",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.8",
        "Number of CDSs": "3318",
        "Average Protein Length": "323.2",
        "Coding Ratio (%)": "93.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "54",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Polymorphobacter fuscus",
                "strain": "strain=D40P",
                "accession": "GCA_009372075.1",
                "taxid": 1439888,
                "species_taxid": 1439888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6904,
                "matched_fragments": 439,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter fuscus",
                "strain": "strain=D40P",
                "accession": "GCA_009607675.1",
                "taxid": 1439888,
                "species_taxid": 1439888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6767,
                "matched_fragments": 441,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter fuscus",
                "strain": "strain=DSM 105347",
                "accession": "GCA_011927825.1",
                "taxid": 1439888,
                "species_taxid": 1439888,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5682,
                "matched_fragments": 450,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter multimanifer",
                "strain": "strain=JCM 18140",
                "accession": "GCA_014647295.1",
                "taxid": 1070431,
                "species_taxid": 1070431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1288,
                "matched_fragments": 336,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter glacialis",
                "strain": "strain=CGMCC 1.15519",
                "accession": "GCA_014643455.1",
                "taxid": 1614636,
                "species_taxid": 1614636,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9947,
                "matched_fragments": 418,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Polymorphobacter multimanifer",
                "strain": "strain=DSM 102189",
                "accession": "GCA_014205635.1",
                "taxid": 1070431,
                "species_taxid": 1070431,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9501,
                "matched_fragments": 382,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas gilva",
                "strain": "strain=ZDH117",
                "accession": "GCA_003515075.1",
                "taxid": 2305907,
                "species_taxid": 2305907,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9472,
                "matched_fragments": 361,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas citri",
                "strain": "strain=RRHST34",
                "accession": "GCA_019429485.1",
                "taxid": 2862499,
                "species_taxid": 2862499,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8832,
                "matched_fragments": 398,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas parva",
                "strain": "strain=17J27-24",
                "accession": "GCA_004564275.1",
                "taxid": 2555898,
                "species_taxid": 2555898,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7686,
                "matched_fragments": 305,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas glacialis",
                "strain": "strain=CGMCC 1.8957",
                "accession": "GCA_014653575.1",
                "taxid": 658225,
                "species_taxid": 658225,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7621,
                "matched_fragments": 376,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas spermidinifaciens",
                "strain": "strain=9NM-10",
                "accession": "GCA_002351485.1",
                "taxid": 1141889,
                "species_taxid": 1141889,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7571,
                "matched_fragments": 358,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas profundi",
                "strain": "strain=LMO-1",
                "accession": "GCA_009739515.1",
                "taxid": 2681549,
                "species_taxid": 2681549,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6604,
                "matched_fragments": 364,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas folli",
                "strain": "strain=RHCKR7",
                "accession": "GCA_019429525.1",
                "taxid": 2862497,
                "species_taxid": 2862497,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6586,
                "matched_fragments": 435,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas baiyangensis",
                "strain": "strain=L-1-4 w-11",
                "accession": "GCA_005144715.1",
                "taxid": 2572576,
                "species_taxid": 2572576,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6553,
                "matched_fragments": 337,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas panacis",
                "strain": "strain=DCY99",
                "accession": "GCA_001717955.1",
                "taxid": 1560345,
                "species_taxid": 1560345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6419,
                "matched_fragments": 333,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas pituitosa",
                "strain": "strain=NBRC 102491",
                "accession": "GCA_001598435.1",
                "taxid": 99597,
                "species_taxid": 99597,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5973,
                "matched_fragments": 365,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas yunnanensis",
                "strain": "strain=YIM 3",
                "accession": "GCA_019898765.1",
                "taxid": 310400,
                "species_taxid": 310400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5392,
                "matched_fragments": 419,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas hengshuiensis",
                "strain": "strain=WHSC-8",
                "accession": "GCA_000935025.1",
                "taxid": 1609977,
                "species_taxid": 1609977,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4945,
                "matched_fragments": 370,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis indica",
                "strain": "strain=DS15",
                "accession": "GCA_900188185.1",
                "taxid": 436663,
                "species_taxid": 436663,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4842,
                "matched_fragments": 348,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas corticis",
                "strain": "strain=36D10-4-7",
                "accession": "GCA_012035195.1",
                "taxid": 2722791,
                "species_taxid": 2722791,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4295,
                "matched_fragments": 355,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingopyxis granuli",
                "strain": "strain=NBRC 100800",
                "accession": "GCA_001591045.1",
                "taxid": 267128,
                "species_taxid": 267128,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3806,
                "matched_fragments": 359,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingomonas oleivorans",
                "strain": "strain=FW-11",
                "accession": "GCA_003050615.1",
                "taxid": 1735121,
                "species_taxid": 1735121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2543,
                "matched_fragments": 268,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium amiense",
                "strain": "strain=DSM 16289",
                "accession": "GCA_003967075.1",
                "taxid": 135719,
                "species_taxid": 135719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1475,
                "matched_fragments": 267,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Sphingobium amiense",
                "strain": "strain=NBRC 102518",
                "accession": "GCA_001591305.1",
                "taxid": 135719,
                "species_taxid": 135719,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0877,
                "matched_fragments": 264,
                "total_fragments": 1141,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_007097155.1",
                "gtdb_species": "s__Glacieibacterium frigidum",
                "ani": 100.0,
                "matched_fragments": 1141,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Glacieibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_018982925.1",
                "gtdb_species": "s__Glacieibacterium sp018982925",
                "ani": 81.8322,
                "matched_fragments": 661,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Glacieibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903643075.1",
                "gtdb_species": "s__CAHJWT01 sp903643075",
                "ani": 80.0892,
                "matched_fragments": 383,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__CAHJWT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_019245455.1",
                "gtdb_species": "s__CAHJWT01 sp019245455",
                "ani": 80.0277,
                "matched_fragments": 398,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__CAHJWT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_903642255.1",
                "gtdb_species": "s__CAHJWT01 sp903642255",
                "ani": 79.8931,
                "matched_fragments": 363,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__CAHJWT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018982885.1",
                "gtdb_species": "s__CAHJWT01 sp018982885",
                "ani": 79.6927,
                "matched_fragments": 561,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__CAHJWT01",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003241875.1",
                "gtdb_species": "s__Polymorphobacter sp003241875",
                "ani": 79.0498,
                "matched_fragments": 504,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Polymorphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004681125.1",
                "gtdb_species": "s__Polymorphobacter_A arshaanensis",
                "ani": 78.8553,
                "matched_fragments": 469,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Polymorphobacter_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000016765.1",
                "gtdb_species": "s__Rhizorhabdus wittichii",
                "ani": 78.0031,
                "matched_fragments": 461,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Rhizorhabdus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_014643455.1",
                "gtdb_species": "s__Polymorphobacter glacialis",
                "ani": 77.9704,
                "matched_fragments": 421,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Polymorphobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014204695.1",
                "gtdb_species": "s__Sphingomonas sp001897045",
                "ani": 77.4887,
                "matched_fragments": 366,
                "total_fragments": 1141,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "96.97",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Glacieibacterium",
        "frigidum"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}